Basic Information

Insect: Mythimna pallens
Gene Symbol: -
Assembly: GCA_961205895.1
Location: OY540849.1:3769915-3800762[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.41 42 5.8 0.2 1 23 496 518 496 518 0.95

2 15 2.5e-05 0.0026 19.1 0.7 1 23 532 554 532 554 0.97

3 15 0.0011 0.11 13.9 1.9 1 23 560 582 560 582 0.96

4 15 4.5 4.6e+02 2.5 0.0 8 23 630 645 624 645 0.91

5 15 0.0011 0.11 13.9 1.9 1 23 651 673 651 673 0.96

6 15 4.5 4.6e+02 2.5 0.0 8 23 721 736 715 736 0.91

7 15 0.0011 0.11 13.9 1.9 1 23 742 764 742 764 0.96

8 15 1.5e-05 0.0015 19.8 2.4 1 23 771 793 771 793 0.99

9 15 2.9e-06 0.00029 22.0 0.4 1 23 799 821 799 821 0.93

10 15 9.5e-08 9.7e-06 26.7 0.1 1 23 827 849 827 849 0.98

11 15 6.6e-06 0.00067 20.9 1.9 1 23 855 878 855 878 0.96

12 15 0.00013 0.014 16.8 2.6 1 23 884 907 884 907 0.96

13 15 9.9e-05 0.01 17.2 2.3 2 23 914 935 913 935 0.97

14 15 1.4e-05 0.0014 19.9 1.0 1 23 941 963 941 963 0.97

15 15 0.037 3.7 9.1 0.1 1 23 969 993 969 993 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.41	42	5.8	0.2	1	23	496	518	496	518	0.95
2	15	2.5e-05	0.0026	19.1	0.7	1	23	532	554	532	554	0.97
3	15	0.0011	0.11	13.9	1.9	1	23	560	582	560	582	0.96
4	15	4.5	4.6e+02	2.5	0.0	8	23	630	645	624	645	0.91
5	15	0.0011	0.11	13.9	1.9	1	23	651	673	651	673	0.96
6	15	4.5	4.6e+02	2.5	0.0	8	23	721	736	715	736	0.91
7	15	0.0011	0.11	13.9	1.9	1	23	742	764	742	764	0.96
8	15	1.5e-05	0.0015	19.8	2.4	1	23	771	793	771	793	0.99
9	15	2.9e-06	0.00029	22.0	0.4	1	23	799	821	799	821	0.93
10	15	9.5e-08	9.7e-06	26.7	0.1	1	23	827	849	827	849	0.98
11	15	6.6e-06	0.00067	20.9	1.9	1	23	855	878	855	878	0.96
12	15	0.00013	0.014	16.8	2.6	1	23	884	907	884	907	0.96
13	15	9.9e-05	0.01	17.2	2.3	2	23	914	935	913	935	0.97
14	15	1.4e-05	0.0014	19.9	1.0	1	23	941	963	941	963	0.97
15	15	0.037	3.7	9.1	0.1	1	23	969	993	969	993	0.93

Sequence Information

Coding Sequence: ATGGATATATGTTGCTTTATATGCGACAACAAGGCGGGTCTCTCACTGCGAAATGCTTCAGGCCTGTTTGGAGAACATAACACATTACAATCCGGCAAGAAAGTGTCAGAGGTAGTGAGTGAGATTGTTGGTAAGCCGGTGGTCGAGAATAAAGTTCATACCAACATACTGTGTAAGAAGTGCCTCAAGACTTGTTCGGAGTATGACAGCATTCAAGTCAGattacaaacaataaaaacagaatTACTGGGACAATTCAAAGAGTCATTAACTAATCATAATATTGATTATGACAACTATGAGAAGAATGTTTCGTTGCCGAAATATAAGCCGATCTCGGCGAAGAAACTAGTGTTACCAGCATCAAAATTACAACCTATACCACCGGACTTGTTACTGAAAGTTGGCAAATTTGCGTCGTTTTCTAAACCTAACATAATCTTACCACAGATTAAGCCGACTACAGCATCAACTTTAAACCTAAAAGTAACCGTCGGATCATCAGTCTTAAcgcaaacaataaaaacatcCACCAGCAAACCAACGGAGAAACCAAATTTAGACTCAAATTCCCTCCTTAATTCACTCACAAGTGCCTTGAAAGATGACCTAGATGACATGGTGACATCGCAAAGCAATATGAACCCTATGAGCCAAAAGAATTCGATGTTGGGTTTCAATGTGAATTCTTTGCCAAAGGATTTTCTTTCGGGGGCTGTTTTGACGAAAATTGATGGGAAGGAAGATGAAAAAGATGTGAAGGGGGAAGACGTGAATGATGATCATCCTATGGAGATCGATGAAGATTGTCTGTCTGTGGTCCCTGTAACAAGTTCGTCTGGCGGGAACTTAGTGCTACAAgttgaaggaatacagTCTAAATCCGAACCTGCACCAGAAGTTAGCGAGTACCTGAACCTACCGTTGCTTGATGCAAATGATGGCGAACTGAGTGACGCTCAGAAGTACATCCTCGGCAAGCTGGAGATACTCAACGAAGGTGATGAAGACGATGATGACGAAGAGGGACacacAAAAGTGGTGGACAGTGAAAACGGCTCGATTCTCCGAATGGTGGCTGGACAGAAGTTCATATATGAAGGTGGCGAGATTTCACTGGTGATGCCCGATGAGGATGAACAACAAGACGGTGACAATGATGGTGATCAGCTCGAGAACGGAGATAGTCAAGATTCTAATGATGAATCTCAAATAGAGCTACAAGTGTCTGGTGATGAAGAAACAGCGAACGCTATCATCGCTGCTGCTCAGGAACAAGGCGGGGCTTTTATAAAAGTGGAATCGGGTGAGATGTTCCGCGTCAAGTCGGTGTCATCGGCGCAACGATCTGACGCGCTTCAGATTGTCGCGCATGAAGGAAACCAGTTCAAGTGTTTGCTGTGCGAGAAGAACGATGAAACCCCACCTGTAGAAGATGCTGACACGATGATGCGACACTTAAAATCAGTTCACGATGCGAGAATATACTTGTGTCGTTTCTGCGGTGCCGTCATGAGGAGGCGCACGGAATATGCATCGcatatagCGTCGCACGTGAGCACCGGCCCCCATGTAGTCGGGACCCGGGCAGGTCACCGCTGCAACGTGTGCGGCAAGAGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACGTGCACTCCGGCGCGCGCCCGCACGCCTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCTCATCTGAAGACCCATGCGCTCGCGCACGCTGCTGGCCGAGCACGCCAACGTGCACTCCGGCGCGCGCCCGCACGCCTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCTCATCTGAAGACCCATGCGGTGAGTACACTAGCAAGAGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACGTGCACTCCGGCGCGCGCCCGCACGCCTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCTCATCTGAAGACCCATGCGCTCGCGCACGCTGCTGGCCGAGCACGCCAACGTGCACTCCGGCGCGCGCCCGCACGCCTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCTCATCTGAAGACCCATGCGGTGAGTACACTAGCAAGAGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACGTGCACTCCGGCGCGCGCCCGCACGCCTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCTCATCTGAAGACCCATGCGGTTCGTCCGCGCCCTTATAAATGCACTCAGTGCGGTAAATCGTTCCTCACACAACAAAATCTTAATCAGCATGAGAAAACACATTCGGGAGTCAAAGACTTCGTCTGTAATATTTGCAaTAAAGCCTTCAGCACACAACACAATTTGGAAGTCCATGGAGTTGTTCACTCTGGGAATAAGGCGTTTGTGTGCAGTGTGTGTGGCAAGGCGTTCGCGAGGAGAGCGGAACTTCGAGACCATATGCGGATACACACGGGTGAGCGTCCATTCTCATGCGACATCTGCGGTGCTCGCTTCACGCAGCGCTCCAACCTACACTCGCACCGCAGAGCGACGCACTTCGACGACAAGAGGTATCACTGCGACCTGTGTCCCAAGAGGTTTAAGAGGAGGAGATTACTAGAATACCACATAAAAGCGTCGCACACCGGCGAGCGCCCCCTCAAGTGCGGCATCTGCCACCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTCAGGATACACAGCGGGGAGAGGCCGTATGTTTGTGAGatcTGCGGTAAATCGTTCAACTCACGCGATAACCGCAACACTCACCGCTTCGTGCACTCCGACAAGAAGCCGTACGAGTGCGTCGCGTGCGGCGCCGGATATATGCGCAAGCAGCTGCTTTACGCGCACATGAACACCAGCGGACATTTGGCAGAATCGATAGTGGTTAATCAACCTAGAGTCATCAAAGTTACTGAAAATatctTTGACACCAGCGAATTAGAGACGAGTGTGAAGTCTGTCGTAAAAGCGGAAACAGAAGTGAGCCTAGCAGATGCCAAGTTCTACATTACTGAAGATAAGAAGTTAATTTTACAAGATAGTgaTAAAGCAACACTGAACCTGATACAGGAAGGCGATGAGTCTGCGTTACTAACTATACATAATATAGGAGAGAGAGCTGAGGGTGGAGCTACTATTCTAGAAGCAGTAGATGTTGATCAACTCGAGCAACAGACTGAGatCGTAGCCAACGACGAAAATGGCGGTATGGTGCGTCTTATACAAATTAAGTTACCGGACGGTAACAACGGGTGGGTCGCTATCAACCGTTGA
Protein Sequence: MDICCFICDNKAGLSLRNASGLFGEHNTLQSGKKVSEVVSEIVGKPVVENKVHTNILCKKCLKTCSEYDSIQVRLQTIKTELLGQFKESLTNHNIDYDNYEKNVSLPKYKPISAKKLVLPASKLQPIPPDLLLKVGKFASFSKPNIILPQIKPTTASTLNLKVTVGSSVLTQTIKTSTSKPTEKPNLDSNSLLNSLTSALKDDLDDMVTSQSNMNPMSQKNSMLGFNVNSLPKDFLSGAVLTKIDGKEDEKDVKGEDVNDDHPMEIDEDCLSVVPVTSSSGGNLVLQVEGIQSKSEPAPEVSEYLNLPLLDANDGELSDAQKYILGKLEILNEGDEDDDDEEGHTKVVDSENGSILRMVAGQKFIYEGGEISLVMPDEDEQQDGDNDGDQLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSAQRSDALQIVAHEGNQFKCLLCEKNDETPPVEDADTMMRHLKSVHDARIYLCRFCGAVMRRRTEYASHIASHVSTGPHVVGTRAGHRCNVCGKSYSSRTLLAEHANVHSGARPHACGVCGKAFASKYTHQAHLKTHALAHAAGRARQRALRRAPARLRRLREGLRLQVHASGSSEDPCGEYTSKSYSSRTLLAEHANVHSGARPHACGVCGKAFASKYTHQAHLKTHALAHAAGRARQRALRRAPARLRRLREGLRLQVHASGSSEDPCGEYTSKSYSSRTLLAEHANVHSGARPHACGVCGKAFASKYTHQAHLKTHAVRPRPYKCTQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCSVCGKAFARRAELRDHMRIHTGERPFSCDICGARFTQRSNLHSHRRATHFDDKRYHCDLCPKRFKRRRLLEYHIKASHTGERPLKCGICHLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENIFDTSELETSVKSVVKAETEVSLADAKFYITEDKKLILQDSDKATLNLIQEGDESALLTIHNIGERAEGGATILEAVDVDQLEQQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01026589;
90% Identity: iTF_01026589;
80% Identity: -