Mpal029633.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- Hivep3_1
- Assembly
- GCA_961205895.1
- Location
- OY540851.1:7696122-7731948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.73 74 5.0 0.4 1 23 48 71 48 71 0.96 2 21 2.3 2.4e+02 3.5 2.6 1 23 78 100 78 103 0.83 3 21 1.6 1.7e+02 3.9 0.8 2 23 105 127 104 127 0.84 4 21 0.0024 0.25 12.8 2.1 1 23 138 160 138 160 0.98 5 21 7.7e-05 0.0079 17.5 1.1 1 23 163 186 163 186 0.96 6 21 0.00045 0.045 15.1 0.3 1 23 193 216 193 216 0.97 7 21 0.069 7 8.3 1.7 3 23 225 245 224 245 0.96 8 21 9.7e-06 0.00099 20.4 0.1 1 23 256 279 256 279 0.95 9 21 1.4e-05 0.0015 19.8 3.4 1 23 285 308 285 308 0.94 10 21 0.75 76 5.0 0.1 3 14 319 330 318 331 0.84 11 21 0.15 15 7.2 0.3 1 23 898 921 898 921 0.97 12 21 0.034 3.5 9.2 3.2 1 23 928 950 928 950 0.98 13 21 3.2 3.2e+02 3.0 0.5 2 21 955 974 954 977 0.81 14 21 0.0007 0.071 14.5 2.3 1 23 988 1010 988 1010 0.98 15 21 5.6e-05 0.0057 18.0 0.1 2 23 1015 1037 1014 1037 0.97 16 21 3.5e-06 0.00036 21.8 1.1 1 23 1044 1067 1044 1067 0.98 17 21 0.019 1.9 10.0 4.6 3 23 1076 1096 1075 1096 0.97 18 21 5.2e-06 0.00053 21.2 0.1 1 23 1107 1130 1107 1130 0.94 19 21 0.00069 0.071 14.5 3.6 1 23 1136 1159 1136 1159 0.90 20 21 2.1e-05 0.0021 19.3 0.4 3 23 1170 1190 1169 1190 0.98 21 21 0.22 23 6.7 2.3 2 23 1197 1219 1196 1219 0.91
Sequence Information
- Coding Sequence
- ATGTCTGATTGTCGCGACAATCCGACATTTTTCTGTTTCGTCAGGTTCGACGGAAAGATAGGAATCGTGATACTTACCGAACAAGAGTTAAAAGAAGATAGAGCGCGCATGGCTATAAGCGAGGGGTACTTGAAGctaccttacaaatgtgaagactGTATCGTCGGGTTCGACCACGAGCTCACGCTGGTCAGCCATATTGAAAAAAGACATAGGAAGATTGAAAATGGTTTCCAATGTAATGTGTGCAAGTCAGTGTCAAGCACCAGACTTTCTCACAGTCAACATATAAAAACACACATCAGAAGATTGGAGTGTATGGTATGTCACAAGAGGTACAACCGAATGCAGTCAGCGGTTCAGCACTATGACGAACAGCACGCTCCAGCGGGGGCGGGTATACAGCAAGGTTACACCTGCAAGGAGTGTGGGTTCACGACCACATCAAACCGCGCATATCGTTACCATTTAGACAAACATAAGAATCATAGTTGCAACATTTGTGGGAATATGTTCGCTAACAGTCAAGGACTCAAAACTCATatgttCACAGTCCACAAACTATCTTCCAGGGTCTACAAATGCGAGCCTTGTAACAAATCGTACCGGTCTCGCACTGGACTCGAGGCACATGAGCGCTCAGCACACAACAGTACAGACCCCCGCGCGTTCTGCGCGTCCTGCAACACGCACTATAGCACCGCGAAGGGGTTGCTGCAACACTTGAGCACACACTCCAAGCATGTTGGCGACAGTGATAAGAGaTTCATCTGCGATGACTGTGGAGCCAAGTTTGCGACAAAGAGCAGTCTACAAATGCATATCAACGGGGAACACTTCCAGGTCAACACGCATCGATGTCCTAAATGTACCAAGATCTTCAAAAGTTTTAGTAACCTGAATCGTCATATCACCTACGTCCACGATAAGAAGAAACCGCTCCGCAACAAGATCTGTGATTACTGTGGAAGAGCCTTTGCTGGGAGGAGCTCAGAGAGCTCGGAGTGCGAGGGAGAAGTGGTTTTCGGTGAAAACTCACGTTTTTACCGAAAACGCGGCATATCAGGGGACAGATCGTCCTCCGAAGGAGAATTAGCGTCGGCCCGCAAGATCTCCACCAGCAGTCGGGGTGCAAGCCGaacgagaggaagagggagggggcTTACCTCCCACGAGGCTGCTGAGAGAGCCGAGAGGCTTTCCGCGGAGGGGCGCTACCCCGCCGCGACCAGCATTAGAGCTGACCCCTCGGGGCCGTCTGGCAGCGAGCCAGACGCCAGAGAAGACTCCGCCGATGAGTCTCGCAGGCTGCTTGGGGTACTGGTGGTCGACGCCAtgtcaaggaagagggagaaGGGCTCCAAGAAAAGGGGCATCGCCCAGTTTGCGACCTCTATCTTGGAGGCTATGGACGCCTGCCTTGATAAGAGGGTCGCGAAGCTCCGAGCTGAGCTCTTAGGTGCCCGAAAAGTTGACCACCAGGAGGAGGCACCAAGAGGGGGGCGCATGCAGGAGCAGGGGCAAAATCAGCCCCAGCCCCAACCCGAGCCGGAGGGCCAGCTGCTGACACTGGtacggcaggagctggctgctctccagcagcaacagcagcagcagcaggagcagatCCAGCAAAGGATACAGCAGCAGCTCTCTGTGctggaaggcatcgtgctgcgtcccccgctttcgacctccggccagcggaAGGCGGCGTCATATGCCGTCGCCACCGCGGTcacggctgctgcgcccaaggcaGGCCCACCGGGGCAAGCTGGGCAcgaggccgtggcgtcggagcgcGCGAGGCTGGCCTCAGCGGccaaacagcagcagcagcgacaGGGAGGGACGGCTCCACCCACAAAGGGTAAAGCAGCACCTGCCCCTAAAGCGGCGATGGCTCCTGCCATGACGGCGACTAGGCCGCCCCTGCCGCCCCCCACCCCGCCTGCAGAATCCTcggccgaatggacggttgtcggggcCAAGAAGAAGGCAGGCAAGGCGTCTAGGGCGgacaaaaagcgcgcgaggcgacagcagcgcaagaagcgggccatggcggccagacttcgcgccccgaattccgaggctgtagttatcacactacagccagacgcggaaaagaagggcgtgacgtatgacgccgtcatggaaaaggcaaggcaggcggtgttgccccaccttggcgagctcggagcctctggaGGCTTtcgcatgaggcgcaccgcaactggggcccgaatgctggagATTGACGTAAGAAACTCGTACATCTGCAACATTTGCCATAACATGCTGAAAAAGATAGAAGCCTTCAAGCAGCAAGTTGAAGAGAGCACAGCATTACTCCTGGATCAGGTACCTAGcttaaagataaacaaactttaCAATTTACAACGTTCTACGATGGAAATTGACTGCGTTACGGAGTCAGAGATCAAAGTGGAAGTGAAACCTAAACTGATAGAATCGGGATGCTTGGATGTGGAAACTGACGCTAACGTCGAGCACGACTCTTCGGACACTGAGACGGAACCATTAGTGgaattaaaaaagaagaaaaaaaagacgaaGAATGAATTGAGATATGAAGGGAAGTTAAGAATTGTGATATTAACTGAGCAAGAACTGAAGGACGAAAGAGAACGCATGGCTAAAAGCGAGGGGTACTTGAAGctaccttacaaatgtgaagactGTATTGTCGCGTTCGACCACGAGCTCTCGCTAGCCAACCATATTGAAAAGAGGCATAAGAAGATGAAAAATGGTTTCCAGTGTCAAGTTTGCAAGTCGGTGTTGAGCACTAAGTTTTCTTACAATCAACATACAAAACGACACATCAGAagATTGGAGTGCATGATATGTCGCAAGAGGTACAGTCACATGCCGTCAGCGGTGCAGCACTATGACGAGCAGCACGCTCCTGCTGGAGCCGGCATACAGCAAGGTTACACCTGCAAGGAGTGTGGGTTCACAACCACTTCAAACCGAGCGTACCGTTATCATATGGACAAACACAAGAAGAAACAGAGCTGTAATATATGTGGGAATATTTTCGTGAATAGCAACGGACTCAAAGTTCATATGAaCACAGTCCACAAACAATCTTTACGCGTCTACAAATGCGAGCAATGCAACAAATCATATCGAGCGCGTTCCGGTCTGAAAGTGCACCAGCGCACAGTACACGGCACTATAGACACGCGCTCGTTCTGCGTGCTCTGTAAGACGCACTTCATCACTGAGAAAGGACTACAGCATCACTTGAGAACGCACTCCAGACACGTCAGTGAGAGCGATAAGAGGTTTATTTGTGATGAATGCGGAGCCAAGTTTGTGACGAAGAGTAACCTGCAAGTCCATATCAGCTGGGAACACTTCAAGATTAACGCCCATCGATGTACTAAGTGTAGCAAGaTCTTCAAAAGTTTTAGGAACCTGAATCGCCACGTCGCCTTCGTGCACGATAAGAAGAAAGCGCCCCGCAACAAGATCTGCGACTACTGTGGAAGGGCCTTCACTACTCAAACAATTCTCCAGTCTCACATCCGAACGCACACAGGAGAGAGGCCGCTACATTGCACGCACTGCCCCGCAACGTTTGCGCATCCAGCTGTTCTCTATActcacaataaattattacatactcccaaataa
- Protein Sequence
- MSDCRDNPTFFCFVRFDGKIGIVILTEQELKEDRARMAISEGYLKLPYKCEDCIVGFDHELTLVSHIEKRHRKIENGFQCNVCKSVSSTRLSHSQHIKTHIRRLECMVCHKRYNRMQSAVQHYDEQHAPAGAGIQQGYTCKECGFTTTSNRAYRYHLDKHKNHSCNICGNMFANSQGLKTHMFTVHKLSSRVYKCEPCNKSYRSRTGLEAHERSAHNSTDPRAFCASCNTHYSTAKGLLQHLSTHSKHVGDSDKRFICDDCGAKFATKSSLQMHINGEHFQVNTHRCPKCTKIFKSFSNLNRHITYVHDKKKPLRNKICDYCGRAFAGRSSESSECEGEVVFGENSRFYRKRGISGDRSSSEGELASARKISTSSRGASRTRGRGRGLTSHEAAERAERLSAEGRYPAATSIRADPSGPSGSEPDAREDSADESRRLLGVLVVDAMSRKREKGSKKRGIAQFATSILEAMDACLDKRVAKLRAELLGARKVDHQEEAPRGGRMQEQGQNQPQPQPEPEGQLLTLVRQELAALQQQQQQQQEQIQQRIQQQLSVLEGIVLRPPLSTSGQRKAASYAVATAVTAAAPKAGPPGQAGHEAVASERARLASAAKQQQQRQGGTAPPTKGKAAPAPKAAMAPAMTATRPPLPPPTPPAESSAEWTVVGAKKKAGKASRADKKRARRQQRKKRAMAARLRAPNSEAVVITLQPDAEKKGVTYDAVMEKARQAVLPHLGELGASGGFRMRRTATGARMLEIDVRNSYICNICHNMLKKIEAFKQQVEESTALLLDQVPSLKINKLYNLQRSTMEIDCVTESEIKVEVKPKLIESGCLDVETDANVEHDSSDTETEPLVELKKKKKKTKNELRYEGKLRIVILTEQELKDERERMAKSEGYLKLPYKCEDCIVAFDHELSLANHIEKRHKKMKNGFQCQVCKSVLSTKFSYNQHTKRHIRRLECMICRKRYSHMPSAVQHYDEQHAPAGAGIQQGYTCKECGFTTTSNRAYRYHMDKHKKKQSCNICGNIFVNSNGLKVHMNTVHKQSLRVYKCEQCNKSYRARSGLKVHQRTVHGTIDTRSFCVLCKTHFITEKGLQHHLRTHSRHVSESDKRFICDECGAKFVTKSNLQVHISWEHFKINAHRCTKCSKIFKSFRNLNRHVAFVHDKKKAPRNKICDYCGRAFTTQTILQSHIRTHTGERPLHCTHCPATFAHPAVLYTHNKLLHTPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -