Basic Information

Insect: Mythimna pallens
Gene Symbol: -
Assembly: GCA_961205895.1
Location: OY540854.1:6827615-6842095[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 35 0.00088 0.09 14.2 0.1 1 23 8 30 8 30 0.97

2 35 0.00042 0.043 15.2 0.7 1 23 36 59 36 59 0.94

3 35 0.014 1.4 10.5 1.3 2 23 67 89 66 89 0.94

4 35 0.00075 0.077 14.4 1.1 1 23 97 120 97 120 0.98

5 35 0.00023 0.023 16.1 0.5 1 23 126 148 126 148 0.98

6 35 3.9e-05 0.0039 18.5 1.3 1 23 154 176 154 176 0.98

7 35 0.00028 0.029 15.8 0.4 1 21 182 202 182 203 0.96

8 35 0.00019 0.019 16.3 1.1 1 23 310 333 310 333 0.94

9 35 0.047 4.8 8.8 1.0 2 23 362 384 361 384 0.96

10 35 0.94 96 4.7 1.3 2 23 407 428 406 428 0.97

11 35 0.023 2.4 9.7 0.1 1 23 432 454 432 454 0.97

12 35 0.0011 0.11 13.9 1.9 1 23 459 482 459 482 0.97

13 35 0.0035 0.35 12.3 0.3 2 23 520 542 519 542 0.96

14 35 0.19 19 6.9 0.6 1 23 548 570 548 570 0.95

15 35 4.9e-05 0.005 18.2 0.8 1 23 576 598 576 598 0.98

16 35 4.6e-05 0.0047 18.3 0.3 1 22 604 625 604 625 0.96

17 35 0.0019 0.2 13.1 0.8 1 23 691 714 691 714 0.94

18 35 0.1 11 7.7 0.4 2 23 743 765 742 765 0.94

19 35 6.1 6.2e+02 2.1 2.8 2 23 788 809 787 809 0.97

20 35 0.038 3.9 9.1 0.3 1 23 813 835 813 835 0.97

21 35 0.0012 0.12 13.8 3.5 1 23 840 863 840 863 0.97

22 35 7.4e-05 0.0075 17.6 0.2 2 23 901 923 900 923 0.96

23 35 0.0016 0.16 13.4 0.4 1 23 929 951 929 951 0.97

24 35 2.7e-05 0.0027 19.0 3.8 1 23 957 979 957 979 0.98

25 35 0.00012 0.012 17.0 0.4 1 21 985 1005 985 1006 0.96

26 35 0.0079 0.81 11.2 0.2 1 23 1072 1095 1072 1095 0.94

27 35 0.17 18 7.0 0.1 2 23 1124 1146 1123 1146 0.94

28 35 2.2 2.2e+02 3.5 5.4 2 23 1169 1190 1168 1190 0.96

29 35 1.2e-05 0.0013 20.0 0.2 1 23 1194 1216 1194 1216 0.98

30 35 0.19 20 6.9 3.5 1 21 1221 1241 1221 1244 0.88

31 35 0.29 30 6.3 3.2 2 23 1252 1274 1252 1274 0.91

32 35 0.0035 0.36 12.3 5.0 1 23 1281 1304 1281 1304 0.97

33 35 0.0007 0.071 14.5 3.8 1 23 1310 1332 1310 1332 0.99

34 35 1.2e-06 0.00012 23.2 0.9 1 23 1338 1360 1338 1360 0.99

35 35 0.0001 0.01 17.2 4.1 1 23 1366 1389 1366 1389 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	35	0.00088	0.09	14.2	0.1	1	23	8	30	8	30	0.97
2	35	0.00042	0.043	15.2	0.7	1	23	36	59	36	59	0.94
3	35	0.014	1.4	10.5	1.3	2	23	67	89	66	89	0.94
4	35	0.00075	0.077	14.4	1.1	1	23	97	120	97	120	0.98
5	35	0.00023	0.023	16.1	0.5	1	23	126	148	126	148	0.98
6	35	3.9e-05	0.0039	18.5	1.3	1	23	154	176	154	176	0.98
7	35	0.00028	0.029	15.8	0.4	1	21	182	202	182	203	0.96
8	35	0.00019	0.019	16.3	1.1	1	23	310	333	310	333	0.94
9	35	0.047	4.8	8.8	1.0	2	23	362	384	361	384	0.96
10	35	0.94	96	4.7	1.3	2	23	407	428	406	428	0.97
11	35	0.023	2.4	9.7	0.1	1	23	432	454	432	454	0.97
12	35	0.0011	0.11	13.9	1.9	1	23	459	482	459	482	0.97
13	35	0.0035	0.35	12.3	0.3	2	23	520	542	519	542	0.96
14	35	0.19	19	6.9	0.6	1	23	548	570	548	570	0.95
15	35	4.9e-05	0.005	18.2	0.8	1	23	576	598	576	598	0.98
16	35	4.6e-05	0.0047	18.3	0.3	1	22	604	625	604	625	0.96
17	35	0.0019	0.2	13.1	0.8	1	23	691	714	691	714	0.94
18	35	0.1	11	7.7	0.4	2	23	743	765	742	765	0.94
19	35	6.1	6.2e+02	2.1	2.8	2	23	788	809	787	809	0.97
20	35	0.038	3.9	9.1	0.3	1	23	813	835	813	835	0.97
21	35	0.0012	0.12	13.8	3.5	1	23	840	863	840	863	0.97
22	35	7.4e-05	0.0075	17.6	0.2	2	23	901	923	900	923	0.96
23	35	0.0016	0.16	13.4	0.4	1	23	929	951	929	951	0.97
24	35	2.7e-05	0.0027	19.0	3.8	1	23	957	979	957	979	0.98
25	35	0.00012	0.012	17.0	0.4	1	21	985	1005	985	1006	0.96
26	35	0.0079	0.81	11.2	0.2	1	23	1072	1095	1072	1095	0.94
27	35	0.17	18	7.0	0.1	2	23	1124	1146	1123	1146	0.94
28	35	2.2	2.2e+02	3.5	5.4	2	23	1169	1190	1168	1190	0.96
29	35	1.2e-05	0.0013	20.0	0.2	1	23	1194	1216	1194	1216	0.98
30	35	0.19	20	6.9	3.5	1	21	1221	1241	1221	1244	0.88
31	35	0.29	30	6.3	3.2	2	23	1252	1274	1252	1274	0.91
32	35	0.0035	0.36	12.3	5.0	1	23	1281	1304	1281	1304	0.97
33	35	0.0007	0.071	14.5	3.8	1	23	1310	1332	1310	1332	0.99
34	35	1.2e-06	0.00012	23.2	0.9	1	23	1338	1360	1338	1360	0.99
35	35	0.0001	0.01	17.2	4.1	1	23	1366	1389	1366	1389	0.97

Sequence Information

Coding Sequence: ATGAACAGACATTACAGGAATTTTGTTTGCGACTCGTGTGACGCAGGTTTCGTTACAAAGGGATCTCTCAGGACACACCTCGGTCGACATACAGTAACAGGCGTTTTCAAATGTAATTTGTGTCCTAAAACCTTTGAAACTAAGGCGAAGGCACGCCGTCATGAAACTGTTGTCCACATATATAAGAATTTGGTAACCAAGTGTGGATACTGTAATGAGAAGTTTACGAGGAGTTCCAAGAGAGATGATCACGTTATGAAAGTTCACGGCGTTCAGATGAAGAAGAATTTTAAATGTGATGCGTGCGAAAGAACATTTAATTCTAAATACGCAGTACGGATCCACACGAGACGAGATCATCTGATGGAGAGACGGTTTAAATGTACAGTATGTGATAAGGCATTTTTCCAAGCTGCCGATTTAAAGTTTCACATGGTGACGCATACAAAAGCTAAAGATTTCCAATGTACTGTGTGTCTGAAGTTGTTTACCCGAAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGACACTAGACGGTTCAAATGTGAGCACTGCGGTCAGGCGTTCGTACAGAAAATCAGTTGGAAAGGACATATGAAGAGTACTCAAGAAAAACCTATCCAGAACCCTAATAGAAATACTGAAGAAATAAGCATTGTTGATCAACAACAGTTCTACACAGAGCTACAACAGTATTTCAGCGGGTACAAAGAGAAAAGTACTCTGGATAACTATATCAAGGATCCTAAATCAGCTAACGAAGAAAAATCAAACCGGAAAAAACGAAAACAAGCAGCTTTTTCTAAAACCACCAAAGAAAGGTTAGAAATTATGGAAGAAACTAAGAAACACCACACGAACttaaaagaaattttaatttgttcCAATGCTACACCTTTTGTCGGAGTAAATTATCTAGGCTATGTGTGTTGCTACTGCGATTCGACGTTCTCAGACGCTGCAGACCTGAAGAAACATACTCTTGAAGATCATAAACAATCATACGAAACTGTAATACCTAACTTTAATAAGCACGTTATAGATGATTTTAGTATGAGGCTAGATATAACTGATTTGCGATGTACACTCTGCCACACTGACATAGACACGTTAGAAAACTTGTTGAAACATCTAAAAGTTAATCACAAAAAAGGAATACACACAGAAATTCGAAGCCAACTCTTACCATTTAAGTTTGATAGCGAAACGATGAAATGTTTTATATGCTCAAGTATTTTCGAAAAATTTAGAGGTCTGCTGGAACACATGCACATTCACTTTAGGAATTTTATTTGCGACGCGTGTGATATGGGATTCTTAACCAAAGGAAGTCTTAGGGCACACATCAGCAAACATGCAACAGGTGTTTTCAAATGTGAATTTTGCTCTAAAAtctttgataataaaaagaaGGTACAGCGCCATGAGAAAGTTGTTCACGTGCATAAAGGTTTTAAGAGTAAATGCGGCTATTGTAATGACAGATTTAAAAACCATGTGAAAAGAGATGAGCACTTGGTAGCAATACACGGTGTCAAGTTAAAGGTTGTTAAATGTCGGGCGTGCGACAGGACATTTCCTAACACACCTGCTTTAAGGATCCATACACGACGAGATCACTTGATGGAGAGACGGTTCAAGTGTATACTATGTGATAAGGCATTCTTCAAAGCTGTCGAATTGAAGTTTCACATGGtaacacatacaaaaacaaaagagtTTCAATGTACTGTGTGTTTGAAGTCGTATGGACGGAAAGAAACTTTAAGGCAGCATATGGAAATACACAGCGACGTTAGACGGTTCAAATGTGAGCACTGCGGTCAGGCGTTCGTGCAAAAAGCTAGCTGGAAGGGGCACATGAGGAGTACTCAGGATAACCCTATCAAGGATCCTAAATCAACTAACGAAGAAAAATCAAACCGGAAAAAACAAGCAGCTTTTCCTAATATCACCAAAGAAAGGTTAGAAATGATGGAAGAAATTAAGAAACACCACACGAACTTAAAAGAAATTCTAATTTGTTCCAATGCTACACCTCTTTTCGGAGTAAATTATCTAGGCTATGTGTGTTGCTACTGCGATACACTGTATTCAGACGCTGCAGACCTGAAGAAACATACTCTTGAAGATCATAAACAATTATACGAAACTGTAATACCAAACATTAATAAGAACGTTATAGATGATTTTAGTATGAGGTTAGACATAACTGATTTGCGATGCACACTGTGCCACACTGACATAGACACGTTAGAAAACTTGTTGAAACATCTAGAAATTGATCACAACAGAGGAATACACACAGATATTCGAAACCAACTCTTACCATTTAAGTTTGACAGCGAAACGATGAAATGTTGTATATGCTCAAGTATTTTCGGAAAATTTAGAGGTCTGCTGGAACACATGCACATTCACTACAGGAATTTTATTTGCGACGCGTGTGATATGGGATTCTTAACCAAAGGAAGTCTTAAGACACACATCACCAAACATGCCACAGGTGTTTTCAAATGTGAATTATGCTCTAAAATCTTTGATACTAAAAAGAAGGTCCAGCGCCATCACAAAGTTGTTCACGTGTATAAAGGTTTTAAGAGTAAATGCGGCTACTGTAATGACAGATTTAAGAACCATATGAGAAGAGATGAGCACTTGGTAGCAATACACGGTGTCAAGTTAAAGGTTGTTAAATGCCAGGCGTGCGACAAGACGTTCCCTAACTCAGCTGCACTAAGGATCCATACGAGACGAGATCACTTGATGGAGAGACGGTTTAAATGTACAATATGCGATAAAGCATTTTTCCAAGCTGCCGATGTAAAGTTTCATATGGTAACGCATACTAAGACTCGAGATTTCCAATGTACTGTGTGTCATAAGTTGTATACTCGGAAGGAAACGTTAAGACAGCATATGAATATTCATAATGACACTAGAAGGTTTAAATGTGAGCATTGCGGTCAGGCGTTCATACAGAAAGCTAGCTGGAAAGGACATATGAAGAGTATCGAAGAAACAGTGAAAAAGGAAACTGTAGAGCCAGCTGTGTTAGTAATCATAGGACCACAAGGTAACTCGAGGTTAAAGGTAAATGATACGCTCCAGCCGTATGTGAATGAATTGGAGAAACATCGCCACAATGTCAGACAAGTCATACAATTTAGTAACGCTTCACCAATACTGCGTCGCGGAGGCATGGGTTACGTGTGCAGTTACTGCTCCCAAGAGTTTCCTGAACCTATGGATTTAAAGATGCATACACTGGAAACTCATGAATCTGAATTAAACCCTATAATTGGATACTCTAAGAGCGCTCAATTATCAGAATACTACGTCAAAATGGACATCACCGACCTCGAGTGCACGGAATGTTCAACATCCATAGATAGTTTGGAAGACTTATTGAGCCATCTGCAACAAGAgcataataaattgatatacaATGACATCCGAAATCGTATCATACCATTTAAATTTGTAACAGAACAACTTACTTGCTGCATGTGCCCCAATACTTAcgataagtttaaaaaattacaggAACATATGCACTCGCATTACAGGAATTACGTTTGCAAAGTCTGTGATGCTGGGTTCATTACCCAGGGAAGTTTGACCAGACACCGTAGCACGCACTCAAAAGGAGTATTCCCCTGCAGCTACTGTCCGAAGGTCTTCGACACGCAGCTGAAAAAGAAATCTCATGAGAGATGTAATCATACTCACACCGATGTGCTTAATAGGTGTGGATATTGCAACAAAGGGTTTAGAGACTACCATTGTAAGGAATTACATATCTCTGAAGTACACGGAGTTAAGCCAATATTATATAAATGCAATGCTTGCGAGAAATGTTACACCACCAAACGTAAACTGAGGCTTCACGAAAAAAGAGACCATCTCTTAGAGAGGAAATACAAATGTCTGACTTGTGACATGAGATTTTTTTCTTCTCATGATGTTAAGAAGCATATGATAACACACACAGGAGAAAAGGATTTCCAATGCAAAATATGTTTGAAAGCATTTGGAAGAAATTCCACTCTAAATAGCCATATGagaatacataacaatgatcgACGATTCAAATGTGAATATTGCGGTATGTCCTTTATTCAAAAATGTAGCTGGAAAACCCATATGAAGCTGAAACATGGAGAGATAGTTTGA
Protein Sequence: MNRHYRNFVCDSCDAGFVTKGSLRTHLGRHTVTGVFKCNLCPKTFETKAKARRHETVVHIYKNLVTKCGYCNEKFTRSSKRDDHVMKVHGVQMKKNFKCDACERTFNSKYAVRIHTRRDHLMERRFKCTVCDKAFFQAADLKFHMVTHTKAKDFQCTVCLKLFTRKETLRQHMEIHSDTRRFKCEHCGQAFVQKISWKGHMKSTQEKPIQNPNRNTEEISIVDQQQFYTELQQYFSGYKEKSTLDNYIKDPKSANEEKSNRKKRKQAAFSKTTKERLEIMEETKKHHTNLKEILICSNATPFVGVNYLGYVCCYCDSTFSDAADLKKHTLEDHKQSYETVIPNFNKHVIDDFSMRLDITDLRCTLCHTDIDTLENLLKHLKVNHKKGIHTEIRSQLLPFKFDSETMKCFICSSIFEKFRGLLEHMHIHFRNFICDACDMGFLTKGSLRAHISKHATGVFKCEFCSKIFDNKKKVQRHEKVVHVHKGFKSKCGYCNDRFKNHVKRDEHLVAIHGVKLKVVKCRACDRTFPNTPALRIHTRRDHLMERRFKCILCDKAFFKAVELKFHMVTHTKTKEFQCTVCLKSYGRKETLRQHMEIHSDVRRFKCEHCGQAFVQKASWKGHMRSTQDNPIKDPKSTNEEKSNRKKQAAFPNITKERLEMMEEIKKHHTNLKEILICSNATPLFGVNYLGYVCCYCDTLYSDAADLKKHTLEDHKQLYETVIPNINKNVIDDFSMRLDITDLRCTLCHTDIDTLENLLKHLEIDHNRGIHTDIRNQLLPFKFDSETMKCCICSSIFGKFRGLLEHMHIHYRNFICDACDMGFLTKGSLKTHITKHATGVFKCELCSKIFDTKKKVQRHHKVVHVYKGFKSKCGYCNDRFKNHMRRDEHLVAIHGVKLKVVKCQACDKTFPNSAALRIHTRRDHLMERRFKCTICDKAFFQAADVKFHMVTHTKTRDFQCTVCHKLYTRKETLRQHMNIHNDTRRFKCEHCGQAFIQKASWKGHMKSIEETVKKETVEPAVLVIIGPQGNSRLKVNDTLQPYVNELEKHRHNVRQVIQFSNASPILRRGGMGYVCSYCSQEFPEPMDLKMHTLETHESELNPIIGYSKSAQLSEYYVKMDITDLECTECSTSIDSLEDLLSHLQQEHNKLIYNDIRNRIIPFKFVTEQLTCCMCPNTYDKFKKLQEHMHSHYRNYVCKVCDAGFITQGSLTRHRSTHSKGVFPCSYCPKVFDTQLKKKSHERCNHTHTDVLNRCGYCNKGFRDYHCKELHISEVHGVKPILYKCNACEKCYTTKRKLRLHEKRDHLLERKYKCLTCDMRFFSSHDVKKHMITHTGEKDFQCKICLKAFGRNSTLNSHMRIHNNDRRFKCEYCGMSFIQKCSWKTHMKLKHGEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -