Mpal018665.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540839.1:20393448-20395286[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-07 9.7e-05 23.0 0.2 2 40 16 52 15 57 0.80
Sequence Information
- Coding Sequence
- ATGGTGTATAACTATAAGCGGAAGACGGATCGGGCCAAATGGTCCGAAGAAAATTTGGCGAAGGCAATAGAAGAAGCCAAAATGACTTCAATATTAAGTGCAAGTAAGAAGTATGGAATTCCATATGCAACATTACATAGACATATTAAGAGTGGTTCTACTGAAAAGAAATTGGGCCGGTTTGAGACTGTTTTTACGCTGGAGGAGGAAAAAGAACTCTTGAAGTATGTTCAAAAGATGGATAGTTTATTCTATGGCGTCACGCGAACCGAGTTTCTGCAGATTGCTGGTGAGTTTGCTAAAAGGAAAGGAAAATCTGGAGTTTTTTCGGGAAATATAGCTGGAAAGGGGTGGTTCAAAAATTTCAGGCTTCGCCATCCAACACTGACTTTGAGATCACCTGAACCCACATCTATTGCTCGAGTTAGAGGGTTTAATCGCGAAGCTGTTAATCGATTTTATTCTTTGTTGGAAGAAGTCgtagaaaaatacaaattagCACCGGATATGATTTTTAACATGGATGAAACGGGAGTGAGAACTTCATCAACAAGACCACCTAAAGTTCTGTCAACTTATGGAAAAAAGCAGGTTGGGATAGTTTCCAGCAATGAAAAAGGAGTCTTAACGACCGTTGTTTGTTGCTGTAGTGCATCGGGAACATTTATCCCACcctttttcattttcaaaagaaaaaggCTCAATCCGAGACTCTTAGACGGTGCTCCACCTGGTGCTGAAGCAATGACCACCGACAGTGGATGGATTAACTCTCAGAAATTTTTGGATTGGTTGCATATTTTTGTGCAAAAAGTACGTCCCAGTAATGATCATAAAGCACTTTTGATTCTAGACGGTCATGAATCACATAAAAGTTACGAAGCACTTGattttgcaacaaaaaataatatcatatttttgacTATTCCTCCTCATACGTCACATAAACTACAACCTTTGGATGTTGCAGTATAcggaccaataaaaaaatacttcgaGATCGAAGtcaacatttttcaaaaacaacatCCAGGAAGAATTATTAGCCAGTATGAGATTGCAAAAATCTTCTCTGGGGCGTATTTGAAAGGAGCTACACCTGCAAACGCAATCAGTGGATTCCGTGCCAGTGGCATCTATCCATTCAATAGTCACATTATTGGTGATGAACATTTTGCGCCGTCTGAGGTTTATCAGGGGAATGCTCCGAACATCATATCCGAAACAAATACCAGTACTAGTCCTAGTAGAGGAGATCAGCACAATACACCAGTAAATAACAACGCAATAGAGAATGATACATCATCGTCAGCCAATCGCTGTCCAACACCGGACACAGACTCCATCCAAAATGTGCCACCTAAGCCTGTTCCCGGATCTCCGCAGCCAGTCACTTCcgtcaatgaaaaaataaatgaaaacacaCACAGTATTCAGCCAGATTGTAATATTTTGCAAGAAATTCGCCCCATACCCATTgaggtaaaaaaaagaaatatgccAGGGCGCAAACAACAAAAATCAGAAATATTAACGAGCACGCCTATAAAGATGGCACAAAGAGAAAAACATGATGCTGCCGCAGCGAAAAAGAAAGTTTCTTTCGATTCCCCTGGTCCATCAAATGTTAAAAAAAGGAAGGCACGTGCCAAAGCAGGTCTATCGAAAGGCaaagaaaacgaaaaaagaGACTTCTTTTGCACTGTATGCAAAGAACAATATATATATCCCCCCTTTGAAGATTGGATACAGTGTGATGTTTGTCGAGAATGGACCCATGAATCATGCTCGTCATATTCTGGAAGAGGGTCTTATTTCTGTGATGATTGCTTTGATTAG
- Protein Sequence
- MVYNYKRKTDRAKWSEENLAKAIEEAKMTSILSASKKYGIPYATLHRHIKSGSTEKKLGRFETVFTLEEEKELLKYVQKMDSLFYGVTRTEFLQIAGEFAKRKGKSGVFSGNIAGKGWFKNFRLRHPTLTLRSPEPTSIARVRGFNREAVNRFYSLLEEVVEKYKLAPDMIFNMDETGVRTSSTRPPKVLSTYGKKQVGIVSSNEKGVLTTVVCCCSASGTFIPPFFIFKRKRLNPRLLDGAPPGAEAMTTDSGWINSQKFLDWLHIFVQKVRPSNDHKALLILDGHESHKSYEALDFATKNNIIFLTIPPHTSHKLQPLDVAVYGPIKKYFEIEVNIFQKQHPGRIISQYEIAKIFSGAYLKGATPANAISGFRASGIYPFNSHIIGDEHFAPSEVYQGNAPNIISETNTSTSPSRGDQHNTPVNNNAIENDTSSSANRCPTPDTDSIQNVPPKPVPGSPQPVTSVNEKINENTHSIQPDCNILQEIRPIPIEVKKRNMPGRKQQKSEILTSTPIKMAQREKHDAAAAKKKVSFDSPGPSNVKKRKARAKAGLSKGKENEKRDFFCTVCKEQYIYPPFEDWIQCDVCREWTHESCSSYSGRGSYFCDDCFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00120453;
- 90% Identity
- iTF_00147393;
- 80% Identity
- -