Mpal018444.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540839.1:19115876-19118095[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-10 6.9e-08 33.0 0.0 3 37 13 48 11 53 0.90
Sequence Information
- Coding Sequence
- ATGGAAAACAAGAAAAAGAAAGGATCATGGGAGCCACAGAGCTTGCAAACAGCTATTGATAAGGTTTTGTCCCAGGAAATGAGTGTAAGACAAGCTGCAATGGTTTATCAAGTTCCTAAAAGCACTTTACAAGACAAGCTTAAAGCATTAAAACGTGGAGACGAAGTGTCGATGAAGCCAAAGTTGGGTAGGTTCACTAACACCTTCTCAGAACAGTATGAACAAGTCTTGGTAGAACACGTCAAAGATTTATCTAACAGATGTATGCCGCTCATGaaaaaagagtttttgaagTTAGCCTACGACTTAGCTGAAGAAATGAAGATCCCTCATCGATTTAATAAGGAGAAAGGAAGTGCTGGTAAACATTTTTACTACGACTTCATGCGAAGGCATTCTGACATTTCGCTGAGAACACCAGAATCGACAAGCATGATGCGCGCTGTTGGATTTAATAAACCACAAGTCGATTTATTTTACGATAATCTTGAAAATCAactgatGACACAATACAAATTCCCACCCTCAAGAATTTACAACTGTGACGAAACTGGTGTCAGTTGCGTACACAAGCACCAAAAAGTCCTCGCCCCAAAATCTATCCGTCAGGTTGGAAAGCTCACGTCTGCAGAAAGGGGCAAAAACATCACAGTTTTGTTCTGTATGAGTGCTAACGGTCACTACATACCACCATTTTTTGTCTTCCCGAGGCAAAGGATGAACGAAAGGCTTATGATTAATGCTCCTGCTGAGAGCGAAGGCGTAGCTCAGCCAAAAGGGTGGATGAACAGTAACTTTTTTCTGCAATATCTAAGAATATTTGTCAAACACACGCAACCGACCAAAGAAAACCCCGTACTGCTTCTGCTGGATGGCCATTGCAGCCACAAGACACTGGCGGTGATCAACTTTTGCAGAGATCATCACATTCGCTTGTTGAGTTCACCACCACACACTACCCACAAGCTCCAGCCTCTGGACAGGACTTTCATGAAGCCATTTAAAGATGCTTACAACCAGCGATGTGATGTGTGGATGAGAACAAATGCTGGATCTCGTATAACGGACTACGATATTGCTGGTTTGGTTAAAGAAGCATTTACAAAAGTAGCTCGACTGGACATTGCAGTGTCTGGATTCAAATGCACGGGAATCTATCCATTCGACCGACATATATTTTCTGATCTGGATTATCTGGCTGCCGATATGACCAATATACCACAAGAACAAATAGAAACTCCATCAAACGCACAAAACACTGGAGAAGCTGTTGTGTTGTCAAACTCAGTCATAGAACAGCCAGGAACCTCATTAAGCACACTGATCATTGAAGGAGATTCAGCTGCTGTCGGTGGATCAGCTTTGATCTGTCATGCTAACATACCTAGTAATATAGTTGAAGACGAATTTTTGGAAGAACCTACACAATCCGTTAGCGATCCTATAGCCACAAGCCCCATACCTTCAACAAGTTCTGCTCCAGATCTTGTTCAGTTAATCCATAAATTATCACCATTGCCTGACGCTGCAAAAAAACGAACTGCAGCTCGAAATAGGAAATGTGAACGAAGTGAAATTCTAACGTCATCACCATACAAAAAAGTagtagaagaaaaagaaaacgaaaaagaaaatatcgtgaaaaacaaaaagaatgaAATAGGATCTAAGTTTAAAGTAGCGATTGAAGGCAATGTAAAACAAACCAAAGGAAAGAGCATAGAGAAAGGAAAACAAGCTAAAGGCGTGAAgtctaaaggaaaaaatggagaTAAAGCTAAGAAAGTAGAACTACAAGAGCAAACATCTAATGCAGACACAACAATTTGTGTAGTTTGCTTAGAAGACTATATAGAAGACTAG
- Protein Sequence
- MENKKKKGSWEPQSLQTAIDKVLSQEMSVRQAAMVYQVPKSTLQDKLKALKRGDEVSMKPKLGRFTNTFSEQYEQVLVEHVKDLSNRCMPLMKKEFLKLAYDLAEEMKIPHRFNKEKGSAGKHFYYDFMRRHSDISLRTPESTSMMRAVGFNKPQVDLFYDNLENQLMTQYKFPPSRIYNCDETGVSCVHKHQKVLAPKSIRQVGKLTSAERGKNITVLFCMSANGHYIPPFFVFPRQRMNERLMINAPAESEGVAQPKGWMNSNFFLQYLRIFVKHTQPTKENPVLLLLDGHCSHKTLAVINFCRDHHIRLLSSPPHTTHKLQPLDRTFMKPFKDAYNQRCDVWMRTNAGSRITDYDIAGLVKEAFTKVARLDIAVSGFKCTGIYPFDRHIFSDLDYLAADMTNIPQEQIETPSNAQNTGEAVVLSNSVIEQPGTSLSTLIIEGDSAAVGGSALICHANIPSNIVEDEFLEEPTQSVSDPIATSPIPSTSSAPDLVQLIHKLSPLPDAAKKRTAARNRKCERSEILTSSPYKKVVEEKENEKENIVKNKKNEIGSKFKVAIEGNVKQTKGKSIEKGKQAKGVKSKGKNGDKAKKVELQEQTSNADTTICVVCLEDYIED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01221452;
- 90% Identity
- iTF_01221452; iTF_01221451; iTF_01026016; iTF_01026017; iTF_01026018; iTF_00637441; iTF_01264390; iTF_01170504; iTF_01170505; iTF_00281103; iTF_00281104; iTF_01029176; iTF_01029177; iTF_00354010; iTF_01029178; iTF_01152026; iTF_01029179; iTF_01029180;
- 80% Identity
- -