Basic Information

Insect: Mythimna pallens
Gene Symbol: clz9_7
Assembly: GCA_961205895.1
Location: OY540854.1:10247095-10260705[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.1e-10 5e-08 33.5 0.0 1 36 11 46 11 50 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.1e-10	5e-08	33.5	0.0	1	36	11	46	11	50	0.95

Sequence Information

Coding Sequence: ATGGAGCCACAAAAGCGGCGAAAAGTTTACAGTGAAACACAACTCGCCGAAGCAATCAAAGCAATTAATAACGGTACAAGTGTATATGAGGCATCAAAAAGGTTTAATATTCCCAAAACTACATTACGAGACAAACGGGACGGGAAATATAAGAATGAAATTTGCGGAGTTCAGCCGgttcttaatttaaatgaaGAAAAACAGATTGTAGACTGGATTCACTACCTTGGCAAGATGGGATTTCCAGTTACAAAAGAACAATTATTAGAAGCAGTGGCTAAGCTAGTCCAAAACTTAAATCGTCCAAACCCTTTTAAAAATGGTGTGCCTGGCAGATATTggtttgaaaattttataaagagACATCCAACAGTATCTAAACGCGTTGCACAAAATCTTCCTTCAAGCCGAAATCAAGTCACAGAAGCGGCTATACGTGCATGGTTCGACAGagtgaacaattattttatgTCAAATAATCTGCATCATGTTTTAGAAGATCCTAGACGAGTGTTTAACTGTGACGAAACTGCTTTCTTTTTATGCCCAAAAGAGAAAGAAGTTTTGGTCAGCAAAGGTAGCAAACGAGTGTATAATCGTGTTGCTAATGACGAAAAAGAGTGCTTGACTGTGCTTGTGAACGTTTCGGCTGACGGAAATCTAGCACCTCCAATGATACTTTTTCCGTATAAACGTTTGCCAAAAAATCTTGTGCCTACATTACCTCGTGGATGGGGACTTGGTAACACGGAATCGGGTTGGATGAACACAGAAGCATTTTATGAATATGTTACCAACTGCTTCTATCCGTGGCTTGTAACAAATGAAATACCATTTCcagtagttttgtttttggatGGTCACACATCTCACATATCACTTCCACTATCAacattttgtaaagaaaaagcAATTATCCTGGTAGCTTTACTTCCCAACTCTACACATATACTACAGCCGCTTGACGTAGCTGTTTTCAGACCAGTCAAAGGAACATGGAGGACTATTGTGCATGAATTCAGAATTCAAAATAACTATGCCAAGCTTAAACGCACTGATTTTGCTCcagcagtaaaaaaatgttttgaccaATGCCTTAAGCCTGAAACCATACAGAGCGGATTTCGATGTTGTGGATTATATCCATTTGATCcatctaaaataaactacagTAAACTGTTGccaaatttaaatcatattgaAGACATCAATCATATAACCACATCTGAATGTGCAGAAAATTTTAAACATGATTTTGAGGCTAGATTGTCACCTATAACCTTACAAACTTTCAAAGATTCGGGAGGCCAATGGATGGGAGATCCAACTTATAAAAAGTTATTCGAATATTGGAAGAAAATTACCCCCGAAAACACCATAAATCAAGAGAGTGGAAGTATTCTGCAGTTAGGGGAATCAacactaaataacaattttttgaaTGTAACGCCAGATATATCTGAGGCTATCCTAAATTTTGATATAGTTACTGAGAGTAATCTAATACTGCCAATAGAGCAAGGTTCAGAAGTATTGGGAGAAGAGGCATCCAACTTGTCCTTGTTTATTGAAAAACCTCTACCCTCGTCGCCTACTGTAAACTTATTAACTGTACAAGATGAGTTCAACCAGTTTCTACAGACATCTACTCCTCAACAAAATGATATTCTTTTACCATCCACCAACGAGTTAACACCCTTGTCCACTTCAATTCTTGCACCAGAAAATAATACTGTAATTGAAATAACCGCGGAGCCGCTAAAAACACTTCAGAAGTATACACCATCACCCAAAAATGAAACCAAAGAGGGCGCTCCAAAAACAAGTGGTAGCTCTGCTATTCCCAcaccatttaaaaattatgcgACACCTTTCAAAAATTCTCTTTACTTTCCGAAGAATAAtaccgattacaataaaaagaagacattaaataaaaaactcacGCCGACAGTAGCTATATCTGATGAGTTTATGGAATATCAAAGgagaattataaaagaaaaagaagacaaagaaaataaaaaaataaaaagaaaacaagaaatCTTGGAAAAAAGGGAACAAAAAGAATTATTGAAGAAAACAACGAcctcaaagaagaaaaaacctattaaaaaagtGAATGCGGTTAACAAAGAAGATTCTCCTGTAGCAGGACCTAGTAAATATCAATCAGATAGCGAATTCGATTTTAATTTACTTCCAAAGGAAGCAGCAAAGCGTCGCGTGCTTTGTACCAGTGAGTTAGAAAATGAATCTAAAAATGGACATAAACATTCTAATAGTACTTTAATTAATGATAGAGACTCTTTTGAAGCAGAAACTACCGTACGTCTATTAGAGTCAAACTCTGCAAGAGAGGCTGTTAAACGTCGAGTCTTATATAGCATTCTATCTCCAGTTGAAGAGGAATCTAACGACTCGTCTCAAAATTACTATACTCCAACTCAACAACCATTCCCTTCTCCGCCGAGGCCATACAGCCCATTACCACCACTAATCATAGAGAGAGTACCCATAACCAACAAACACGATGAGCCAGAAGAATTCTACACGaaactacataaaaaaataataaaaatatatgtaaaactttttattgaaaatcGTAACTTGAGTAGCATACATTCCAATGAAAGTTTAGTTAACGATGATGATCCTGTCAAAAGCGATGGCTCTGACTCTGTTGAAAATCTAGATTTACGTTTTCTTGAAAGTATTTCTCCGGTAAATGGAGATTTCGATTCAATCATTGAAGATAGAAAGGCTAGAGAGAGTTCCGCTTCTACAAAATCTAATGGATATGGGGCTGATTTTGAATCTATGGATACCGCCATAATAGATGTTGTAAATAACACAACATCGACCGAAGATGCAATAAGTATATCCAAGGACAGAGATAATATAGGAAATAAGGACTCTGATAACTGTAGATCAAGTGAACATATAACGTCTAGTAGAAGCGATAATCGAGTTTCAGAAGAAGGACTAGTTTCCAAAATAGATGAACAAGAAACGACTGAAATTGGAAAATCAAAGGAAATAGAGATTGAATACAGTTACGAGGATGAAGAATCAAATAATGAAAGTATTGATGAACATGAAATAACTGAAGAAACTAATAAAACTGGACACTCTGATAGAGTAATTGAATCGCGTCATTCCAAAATCAACGATCAAGAAATGACTGATAGTAAAGACTCTAGTGAACCAGAGAAtgaacaacaaacaaaaaacaaaacagatacTGATTCAGGTTCACGTGACTCAGAAACAAGATCGAAACAAGGTGAAAACGGAGATGAAGAGACTAGCAGTTCCAGTGAAGATTCTGACTACAGACAAATTACTACCATAGCTTTAGTCCATTTTGACGGTTCCAAAGATACTGAAGATCGAGAGAGTCGAATCTACGAAGATTCAGTCAAGAGTGTCATATTGCCGACGATGTACAGGAGAGTGATCGGTCGTAGTCCTGATGATGGGCTTAAAGTTGTAGCGGAATTGGAAGACAAAGACGATCCAAAAACTGGCCCAACATTCGATCCAGAAGAAGGTCTTAGTACTGAGGAAGATCTTGAAGAAGTTCCTGATGTCATCAGCGAAGACATATTGGCAATGAGGACTTCGACTCCAGCAGCTACAGACGAAGAGTTTGAAGAAAGGAGAACTCCTCGATTAGACACTCCTGAAGAACAAGTTGAATTAAACAGAACTCATCAACCAAAAACTAATGAAGACAAAGATGGAGAGGAAGATGACGCAGAAATGGAAAGCCCTTATTCAATAGAACAAATGAGGATTCCACGGCCAGATTTTTCTAGAGGAACAATGCTAGTAACACACCAAAGCGATTCCGAATCAGTTTGTGAACATACTGCCTTGCCCCAAGAAGCGACTATGATGACGTCATCATCCCAAGATGGCGCTGACCAAAATATTTCCGATATTCAAACTTCGAACGACATTAATGACATTTTAACGTCAATTATCAATGAGAGTCGAAGTAAAAATGAAACTCCTGTCTCTACAAAAAagaggaaacttgttgataaATCAGTTCAAGCAGCTCCAACAATGAGGGTGACATGGGAAGAAATGCGCACAAATTTCTTTGTAGGAACGCCAAAGATATTCAGGCTTTGTGCCTGTACAGatcatatttgtttttaa
Protein Sequence: MEPQKRRKVYSETQLAEAIKAINNGTSVYEASKRFNIPKTTLRDKRDGKYKNEICGVQPVLNLNEEKQIVDWIHYLGKMGFPVTKEQLLEAVAKLVQNLNRPNPFKNGVPGRYWFENFIKRHPTVSKRVAQNLPSSRNQVTEAAIRAWFDRVNNYFMSNNLHHVLEDPRRVFNCDETAFFLCPKEKEVLVSKGSKRVYNRVANDEKECLTVLVNVSADGNLAPPMILFPYKRLPKNLVPTLPRGWGLGNTESGWMNTEAFYEYVTNCFYPWLVTNEIPFPVVLFLDGHTSHISLPLSTFCKEKAIILVALLPNSTHILQPLDVAVFRPVKGTWRTIVHEFRIQNNYAKLKRTDFAPAVKKCFDQCLKPETIQSGFRCCGLYPFDPSKINYSKLLPNLNHIEDINHITTSECAENFKHDFEARLSPITLQTFKDSGGQWMGDPTYKKLFEYWKKITPENTINQESGSILQLGESTLNNNFLNVTPDISEAILNFDIVTESNLILPIEQGSEVLGEEASNLSLFIEKPLPSSPTVNLLTVQDEFNQFLQTSTPQQNDILLPSTNELTPLSTSILAPENNTVIEITAEPLKTLQKYTPSPKNETKEGAPKTSGSSAIPTPFKNYATPFKNSLYFPKNNTDYNKKKTLNKKLTPTVAISDEFMEYQRRIIKEKEDKENKKIKRKQEILEKREQKELLKKTTTSKKKKPIKKVNAVNKEDSPVAGPSKYQSDSEFDFNLLPKEAAKRRVLCTSELENESKNGHKHSNSTLINDRDSFEAETTVRLLESNSAREAVKRRVLYSILSPVEEESNDSSQNYYTPTQQPFPSPPRPYSPLPPLIIERVPITNKHDEPEEFYTKLHKKIIKIYVKLFIENRNLSSIHSNESLVNDDDPVKSDGSDSVENLDLRFLESISPVNGDFDSIIEDRKARESSASTKSNGYGADFESMDTAIIDVVNNTTSTEDAISISKDRDNIGNKDSDNCRSSEHITSSRSDNRVSEEGLVSKIDEQETTEIGKSKEIEIEYSYEDEESNNESIDEHEITEETNKTGHSDRVIESRHSKINDQEMTDSKDSSEPENEQQTKNKTDTDSGSRDSETRSKQGENGDEETSSSSEDSDYRQITTIALVHFDGSKDTEDRESRIYEDSVKSVILPTMYRRVIGRSPDDGLKVVAELEDKDDPKTGPTFDPEEGLSTEEDLEEVPDVISEDILAMRTSTPAATDEEFEERRTPRLDTPEEQVELNRTHQPKTNEDKDGEEDDAEMESPYSIEQMRIPRPDFSRGTMLVTHQSDSESVCEHTALPQEATMMTSSSQDGADQNISDIQTSNDINDILTSIINESRSKNETPVSTKKRKLVDKSVQAAPTMRVTWEEMRTNFFVGTPKIFRLCACTDHICF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -