Mpal022705.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540843.1:6815504-6817552[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.8e-11 3.4e-08 34.0 0.1 1 40 9 48 9 53 0.93
Sequence Information
- Coding Sequence
- ATGCCTCCCAAACGAGCATTGTGGTCAGAAGACGATCTGGTCTCAGCTGTTCGAGCAGTACAAAGAGGATCTATGAGTACGTATACGGCTGCAGAAAGATATAAAGTTCCTAGAAGAACAATCAGAAATCATCTACAGTCTGGCAATTTAAAGAAAACTTTGGGACGTAAACCTATATTAAATGGTGAAGGCGAATCTCAACTTGTGCAAAGGATAATCCGGTATTCTGAAATGGGCTTGCCTGTGACACCAAGAATATTGCGTCGATTGGTATataaatattgtgaaaaaaataatataaagcaCAATTTCAATAATACTGCCAAACTCGCAGGTAAAGACTGGTTTAAAGCTTTCATGAAAAGGCACAGTGAAATATCGGTAAGAAAAGCTCAGTTCATGAACCCAGCTAGAGCAcaaaaactcaataaatttattgtcaATGACCactttgaaaaattgaaagataTCTATGATAAATTTGACTTAAGTGATCACCCCGAGAGAATATATAATATGGACGAGAAAGGATGCCGTCTCACTGTCCACCACCAGCAAAGTGTCCTGGCCAAAAAAGGGGCTAAAAGGGTTCATTTGCAGTCTTCTGAACATGCTGAAAGTGTAACTATTGCAGGATGTGTTAATGCTCTCGGTACTGCCATACCACCTATGGTCATATTTAAGGGAAAACGTTTGAAACCGGAATTATACGATAATTTGCCACCGGGATCTTTGGTCGAAAAATCAGCAAAAGGGTATATGACCAATGAACTTTTCAAAACATTCTTAGCACACCTGGCTCGATACAAAAGCGCGGGGCCATGCCTTTTAATATTTGACGGAGCAGCATGTCATTTAGATTTGTCCATAGTGGATGTCTCTGACACCCTTGGCATAAATTTGTACTGTTTACCTTCCAACACAACACACGAACTGCAGCCTCTCGATAAAGCCGTCTATCGATCGTTTGAGCATCATTGGGATGCTGAAGTTTTATCATTTTTGGACCAAAATAGAGACAAAAAACTCACCAAAGCTCGCTTTAATATCATTCTTTCAAGCGTTTGGTCGAAATGTATGACACACAGTAATATTACAAGTGGCTTTAGAGCGACTGGCTTGTATCCCTTCAACCCAGAGGCCATACCAGAAACAGCTTTTGCTCCTTCAATTTTATCAGAAGCTCCAGCACCTGATAGGGAACAAGAGAACGTACCAGCTCTCAATCATCCTCAACCACAAGCTCCAGAATCTGGAGATACAACACCATCTATTTTATCGGAAGTCTCAACGCCTGATCTTGACCAAGAAAATGTACCACCTATTGATACTTATCAACGGAAGACCCCAGAAACTGGTGATAGTTCACCATCAATTTTAACACAGATTCCAATACCCGATATCCCTCGAGGAAATATTACCCCAGTTGATTGTGGTCAACCGACGACTCCAGAAGAAGCTAAGCAATCACCAGCAATAGCGTCAACATCAACAGGGCAAACCTCAAGAGATCCAACCGTGCACCGTAACTTTTACCACACAGTTTATGGTACAAGCTCTAGTTCAGAGGAATCTGATGATTTGCCACTCATTCAATCAAAAAGAAATGAATTTTATGATCTACTGCCTACGCCTGTTAAAGTTCAAACGAAAACACCGACTATCAGGCGTAAAGCCATTAATTATCGAGGTACCCCAGTCACAAAAGATCTGTTTGATAAATATAATGAAGAGAAAAGAAAGACAAgtaacaaaaggaaaaaaaatagtcaagaGGAGAATTTCAGTGAAGGGAAAAAAGATAGAACAGAAAAGAAGAAATCTAAAAAGACTTCAAATCCAAAGAAAGATAAAATCGTATCTGCAAAAAAGTCAACCGCCATCAAAGCCACACAAAACCAAGTGAGTTGGTACTGTCATGCCTGCGAAGAAGACAGAATGGATGATGCAATGAGGCAATGCTCGCGATGCTCAAAATGGTATCATGAAGAGTGTGTCGGGCTGTCGGCAGAAGATACTGATGACTTTCAGTGTCCTGATGGTTGCTAA
- Protein Sequence
- MPPKRALWSEDDLVSAVRAVQRGSMSTYTAAERYKVPRRTIRNHLQSGNLKKTLGRKPILNGEGESQLVQRIIRYSEMGLPVTPRILRRLVYKYCEKNNIKHNFNNTAKLAGKDWFKAFMKRHSEISVRKAQFMNPARAQKLNKFIVNDHFEKLKDIYDKFDLSDHPERIYNMDEKGCRLTVHHQQSVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGKRLKPELYDNLPPGSLVEKSAKGYMTNELFKTFLAHLARYKSAGPCLLIFDGAACHLDLSIVDVSDTLGINLYCLPSNTTHELQPLDKAVYRSFEHHWDAEVLSFLDQNRDKKLTKARFNIILSSVWSKCMTHSNITSGFRATGLYPFNPEAIPETAFAPSILSEAPAPDREQENVPALNHPQPQAPESGDTTPSILSEVSTPDLDQENVPPIDTYQRKTPETGDSSPSILTQIPIPDIPRGNITPVDCGQPTTPEEAKQSPAIASTSTGQTSRDPTVHRNFYHTVYGTSSSSEESDDLPLIQSKRNEFYDLLPTPVKVQTKTPTIRRKAINYRGTPVTKDLFDKYNEEKRKTSNKRKKNSQEENFSEGKKDRTEKKKSKKTSNPKKDKIVSAKKSTAIKATQNQVSWYCHACEEDRMDDAMRQCSRCSKWYHEECVGLSAEDTDDFQCPDGC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00924530;
- 90% Identity
- iTF_00984984;
- 80% Identity
- -