Mpal017928.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- clz9
- Assembly
- GCA_961205895.1
- Location
- OY540839.1:8126262-8128328[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-11 2.2e-08 34.6 0.0 1 36 11 46 11 50 0.95
Sequence Information
- Coding Sequence
- ATGGAGCCACAAAAGCGGCGAAAAGTTTACAGTGAAACACAACTCGCCGAAGCAATCAAAGCAATTAATAACGGTACAAGTGTATATGAGGCATCAAAAAGGTTTAATATTCCCAAAACTACATTACGAGACAAACGGGACGGGAAATATAAGAATGAAATTTGCGGAGTTCAGCCGGTTCTTAATTTAAGTGAAGAAAAACAGATTTTAGACTGGATTCACTACCTTGGCAAGATGGGATTTCCAGTTACAAAAGAACAATTATTAGAAGCAGTGGCTAAGCTAGTGCAAAACTTAAATCGTCCAAACCCTTTTAAAAATGGTGTGCCTGGCAGATATTggtttgaaaattttataaagagACATCCAACAGTATCTAAACGCGTTGCACAAAATCTTCCTTCAAGCCGAAATCAAGTCACAGAAGCGGCTATACGTGCATGGTTCGACAGagtgaacaattattttatgTCAAATAATCTGCATCATGTTTTAGAAGATCCTAGACGAGTGTTTAACTGTGACGAAACTGCTTTCTTTTTATGCCCAAAAGAGAAAGAAGTTTTGGTCAGCAAAGGTAGCAAACGAGTGTATAATCGTGTTGCTAATGATGAAAAAGAGTGCTTGACTGTGCTTGTGAACGTTTCGGCTGACGGAAATCTAGCACCTCCAATGATACTTTTTCCGTATAAACGTTTGCCAAAAAATCTTGTGCCTACATTACCTCGTGGATGGGGACTTGGTAACACGGAATCGGGTTGGATGAACACAGAAGCATTTTATGAATATGTTACCAACTGCTTCTTTCCGTGGCTTGTAACAAATGAAATACCATTTCcagtagttttgtttttggatGGTCACACATCTCACATATCACTTCCACTATCAACGTTTTGTAAAGAAAAAGCAATTATCCTGGTAGCTTTACTTCCCAACTCTACACATATACTACAGCCGCTTGAAGTAGCTGTTTTCAGACCAGTCAAAGGAACATGGAGGACTATTGTGCATGAATTCAGAATTCAAAATAACTATGCCAAGCTTAAACGCACTGATTTTGCTCcagcagtaaaaaaatgttttgaccaATGCCTTAAGCCTGAAACCATACAGAGCGGATTTCGATGTTGTGGATTATATCCAATTGATCcatctaaaataaactacagTAAACTGTTGccaaatttaaatcatattgaAGACATCAATCATATAACCACATCTGAATGTGCAGAAAAAGTTGAACAAGATTTTGAGGCTAGATTGTCACCTATAACCTTACAAACTTTCAAAGATTCGGGAGGCCAATGGATGGGAGATCCAACTTATAAAAAGTTATTCGAATATTGGAAGAAAATTACCCCCGAAAACACCATAAATCAAGAGAGTGGAAGTATTCTGCAGTTAGGGGAATCAacactaaataacaattttttgaaTGTAACGCCAGATATATCTGAGGCTATCCTAAATTTTGATAAAGTTACTGAGAGTAATCTAATACTGCCAATAGAGCAAGGTTCAGAAGTATTGGGAGAAGAGGCATCCAACTTGTCCTTGTTTATTGAAAAACCTCTACCCTCGTCGCCTACTGTAAACTTATTAACTGTACAAGATGAGTTCAACCAGTTTCTACAGACATCTACTCCTCAACAAAATGATATTCTTTTACCATCCACCAACGAGTTAACACCCTTGTCCACTTCAATTCTTGCACCAGAAAATAATACTGTAATTGAAATAACCGCGGAGCCGCTAAAAGCACTTCAGAAGTATACACCATCACCCAAAAATGAAACCAAAGAGGGCGCTCCAAAAACAAGTGGTAGCTCTGCTATTCCCAcaccatttaaaaattatgcgACACCTTTCAAAAATTCTCTTTACTTTCCGAAGAATAATaccgattataataaaaagaagacattaaataaaaaactcacGCCGACAGTAGCTATATCTGATGAGTTTATGGAATATCAAAGgagaattataaaagaaaaagaagacaaagaaaataaaaaaataaaaagaaaacaagaaatCTTGGAAaaaagggaataa
- Protein Sequence
- MEPQKRRKVYSETQLAEAIKAINNGTSVYEASKRFNIPKTTLRDKRDGKYKNEICGVQPVLNLSEEKQILDWIHYLGKMGFPVTKEQLLEAVAKLVQNLNRPNPFKNGVPGRYWFENFIKRHPTVSKRVAQNLPSSRNQVTEAAIRAWFDRVNNYFMSNNLHHVLEDPRRVFNCDETAFFLCPKEKEVLVSKGSKRVYNRVANDEKECLTVLVNVSADGNLAPPMILFPYKRLPKNLVPTLPRGWGLGNTESGWMNTEAFYEYVTNCFFPWLVTNEIPFPVVLFLDGHTSHISLPLSTFCKEKAIILVALLPNSTHILQPLEVAVFRPVKGTWRTIVHEFRIQNNYAKLKRTDFAPAVKKCFDQCLKPETIQSGFRCCGLYPIDPSKINYSKLLPNLNHIEDINHITTSECAEKVEQDFEARLSPITLQTFKDSGGQWMGDPTYKKLFEYWKKITPENTINQESGSILQLGESTLNNNFLNVTPDISEAILNFDKVTESNLILPIEQGSEVLGEEASNLSLFIEKPLPSSPTVNLLTVQDEFNQFLQTSTPQQNDILLPSTNELTPLSTSILAPENNTVIEITAEPLKALQKYTPSPKNETKEGAPKTSGSSAIPTPFKNYATPFKNSLYFPKNNTDYNKKKTLNKKLTPTVAISDEFMEYQRRIIKEKEDKENKKIKRKQEILEKRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709154; iTF_00709156; iTF_00709155; iTF_00709180; iTF_01527061; iTF_00709176;
- 90% Identity
- iTF_01029162; iTF_01029164; iTF_00709156; iTF_00709155; iTF_00709180; iTF_00709154; iTF_00709176; iTF_01527061;
- 80% Identity
- -