Mlor024070.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- K02A2.6
- Assembly
- GCA_029852875.1
- Location
- CM056803.1:1810226-1819190[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 3.9e-05 0.0034 18.6 0.7 2 23 1281 1302 1280 1302 0.97 2 7 6.1 5.3e+02 2.3 5.1 3 23 1308 1329 1306 1329 0.95 3 7 0.00013 0.011 17.0 3.6 2 23 1340 1362 1339 1362 0.97 4 7 0.36 32 6.1 0.8 1 23 1369 1392 1369 1392 0.93 5 7 0.015 1.3 10.5 0.7 5 23 1404 1423 1403 1423 0.93 6 7 0.0005 0.043 15.1 4.7 1 23 1432 1454 1432 1454 0.98 7 7 0.0028 0.24 12.8 0.3 1 23 1459 1482 1459 1482 0.97
Sequence Information
- Coding Sequence
- atgtcgATAGGACAAATAAAAGAATTCGACGTTAAGTCCGGCACGTGGTCGGTCTATGTGGACCGGTTAGACATGTACTTTAAGGTGAATAAAATTGAAGAGGACACAAAGTTACCTACCCTTATAGCCGTTATGGGGGATGAGGCATATGAACTGTTGGGTAATCTTGCAAGTCCACAAAAACCAGCGGAATTAAGGTACGACAGAGCAGTGGAACTGTTACGTCAGCATTTAGAACCAACGCCGTCGGTACTCGCTGAACGTTATCGGTTTAGACAACGGAGACAAAATGGAGAAGAAACAATAGCAACATACGTAGCCGAACTAAAGAAACTGGCACGATATTGCAAGTTTAAAGACGGCTTGAATGACAATTTACGAGATCAATTCGTATGCGGTCTACGGAGCGATGTCATTCGGCAACGACTTTTTGCGGAAGCCGACACAATAACGTACACAGAGGCTGTAAGGCTGGCGAGTTCACTGGAGGCGGCGGAGCGGGATGCAGCCGCGGTGGAGGCGACGGCGACGGTGGGCAGTGGAGGTGACGCAACGGGCGGCCGGCCGGAGCAGGCGGTGCACGCGCTCGGCGGCGTCGAACATGTCGGTGCGGGCGCACGCCGACAAGCGCCGCGGTCGGCGCGATCGTCCCGCGGGCGGCACAGCAGCGGACACAGCTTGCGACCGCATGCTGGCGGGAACGGCACAAGCAATGGCGGTCGGCCATTCCATTGTTGGGGGTGCGGAGCAACGGAACATTCTTATTCAGATTGCCGGTTTCGCAACTATGTCTGCAGCAACTGTAGGCGGCCGGGACACTTGCGGCGCGTATGCCCTGGTAGGGCGGGGAACGGGGTTGGAGGAGCAGCAGGCGCTAGTCATCCAACAGTAAACTACGGTGATGCGAGTGACGGGCTACCAGGTCAGGGAAGCATACCGGAAAGTGATTTTCACCAACTGTGCCTGAACGATTACCGAGCGGTAAGCTTAACAATATGtattgacaaaataaatattcccaTGGAGATCGATACTGGTACAGCGATATCGTGtattagtaaagaaacatacagGAAATATTTTAGTGCGCATAAATTAGAATATAGTGAACTGATTTTAAATTTCTATGACGGCTCAAAAATTAAACCTGTGGGTATGTTTAAACCTGTAGTAATGTACGGAGATTGTAGGAAACAActggaattatttgtaattgaaGGAGGTACCACGTCATTGCTGGGCCGTCAGTGGTTAACAGAGTTAAACATACAAATTCCAGTATATAGTCGCTGCCACAATATGAATGGTAAAGGGTTTAATATGTCTAATGAAATCGATAATTTGTTAAACAGATATAAAGAGCTATTCAGCGGCGGTTTGGGGCGGTATACCGGAGGCAAGGCAACGCTGCGCGTGCGCGAGGGTGCCACGCCGGTGTTCCACCGGGCGCGACCCGTACCGTATGCGCTGCTCAGCCGGCTCGACGCCGCGCTCGACGCCATGCTGCACGACGGCATCATCGAGCCTGTCGACTGCTCCGACTGGGCCTCACCGCTGGTACCGGTAAATAAACCTGACGGCTCACTGAGAATCTGTGCTGATTATAAGGCCACTCTAAACCCAGTACTTATTACTGATCGCTATCCATTACCCAGAATAGAAGATCTCTTAGTTAAACTTAGCGGAGCTagctatttttcaaaaatagatttaACGCAAGCGTATAATCAAATTGAACTAGACGATTCTAAGGAATATACAGTTATAAATACGCATAGGGGGTTATACAGGTATAATCGATTAGTTTTTGGTCTGTCGTCGAGTCCGGGGATTTTCCAACGAATTATGTGTAATTTGTTGAAAGGGATACCGAATGTAGAAATTTTTCTAGACGATATAATTATAGCAGGAAAAACCCAACAGGAACACTTAGAAGCATTAGAAAAAGTTCTCAGCGCGCAAGTGTTGGCGCATTACGAACCTAGTAAACAGTTAATATTGACATGTGACGCGAGCGCACGCGGAATAGGGGGAGTGCTCACACAGCCCGGCGAGCGGGGCGAGCGGCCGGTAGCGTACGCGTCGCGCACTCTCACGGAAGCTGAGAAAAACTATTCACAAATACATCGTGAGGCACTCGCGATAATCTTTTGTGTGAATAAATTCCATCAATATTTATATGGTCGTAATTTCATCTTAAGAACGGATCATAAGCCTTTAGTATCAATATTCGGACCTAATACAGGTATACCGACTATGGTGGCCAGTCGTATGCAACGATGGGCTATTATATTATCAGCCTACTCGTTTACTATTGAGTACGTCCGCACTGATCAAAACGGCGCGGACGGGTTTTCGCGATTACCGGTAGTGGATAAACAAACAAGTATGGTTGAGCCGCCAGAGCAAACTCATTTGCACTTCGTGCAACAATCgttattattagattataaCGATATTAAGCGTCAAACATTACGGGATGTAGAATTATCAAAAATACTAAGTTATGTCCGAGATGGGTGGCCTAAAGATTGTGAACTTAGTAACCTCAAACCTTACTTCAATAGGAAAAATGAACTTTATGAAGAACTAGGCTGCATCATGTGGGGCCATAGACTGGTAGTACCAGAGACTTGTAGGGATAAAGTATTGCTATTGTTACACGAACCTCACATGGGTATCGTGAAGTCAAAGGCTTTAGCACGAAGTTATGTATGGTGGCCCGGGGTGGATGAAGCTGTGGAGCGCATGTGTCGCGGCTGCGAGACGTGTGCGGCGCAGGCGGACGCACCGCCGCGACAGGCGCCACGCATGTGGGCCTGGCCTAGTCGGCCTTGGAGCAGGCTACATATAGATTATCTCGGACCCATAGGGGGCCGAACATATCTAGTAGTGGTAGATGCTACATCTAAATGGCTGGAAGTATTTAATGTTTCGAACACGTCCGCATACAATCTCATAGATAGATTAATGgaattatttagtagatggggGTTGCCTAGACAGATAGTTAGTGATAACGGTACACAATTCGCATCGAAAGAATTTCAGGAATTTACAAAAACGAATGGAATAGAACACATTTTTACTGCCCCTTATCACCCGGCTTCAAACGGCTTAGCAGAAAATTCAGTTAGAACTGTAAAAAAGGTTATAAAGAAAGCTATGTTAGAGAAGCAAAATATAGATAGGGCATTATGGACGTTTTTGTTGCATTATAGAAATATAGAACATTCTACAACTGGGGAAAGTCCATCCATGATCTTACTAGGCAGGCATATACGTACACGGCTCGATATCATTAAACCAGATCGGCAAAACAGAGTTCACAAAGCACAACAACGCCAGGTTGAAAATGCGGAGGGCGGGAAACGAAGTATTGGAGGAGAGGGAGCTGACGTATGGTATCGTCAATTCTTAAAGGGTGAGAGATGGCTACCCGGTCAAGTAGTTGAATGTTTAGGCCCTAGCAACTACCAAGTGAAAGGGGGAGGGGGAGAAACAGTACATCGACACATTGATCAGTTACGTAGGAGAACAGGGGGGAGGTTATCCTTAGTAGCCAGTGGCCCTAGTAATGTTGAGCGATCACACACAGATTCTCAGGCGATGTCAGCAGAGTCGATGACTGGTAGCAGTTGTGAGCGAACTGGGGCGGAGGAGTCAGCAGACAGGGGCGGACCGTCGTCAAGGGAAGCGTCACCGTCTCAACTGACTGCGGAACCAGAGGAACCAAGTGAAATCCAGGTTGCCTTGCCTCAGGCTCCACCGACTCCCCAACGCGCTGTTAGAACGACGCATAACGAAGAGGTTCGCGCCAAGACAGTACATCTTCCAGTGACGTGCGAGATCTGTTCGCGCGACTACAAGAACAAGGCGAGCCTCAAGCGACATCTGTTGACGCATGACGAAGACGTACACTGTGACATCTGCTTCGAGAAGTGCAAGAACAGGATCACGCTGGGACATCACTACTTGAAGGTGCACAACGAGAAATATGTGGGAGCGCCGGAGCAGACGTGCCCGCACTGCGACCGCATCTGTGCGACGCGCGCGATGCTCAAGCGGCACATGCAGAGGATGCACAGCGATAGAACTAAGAAGTACCAGTGCGACCACTGCCAGCGCCTGTACCTGACGAAGGGCGAGGTGCGCGCGCACATCACGTGGTCGCACATGCCGGCGGAGGCTCGTGGGGGGCACGCGTGCACGTGCGGCCGCATCTTCCGCAGCCCCTCGCTGCTGCGCGACCACAAGGCCAGGTTCCACGCCGCCGAGCCGCCGCCCCGTGTGCACCAGTGCGACCACTGCGAGAAAGCTTTtgctAACAAACAAGTCCTAAACCGCCACAAGAAAAGCCACTCCAACGAGATGTATCCCTGCAACGAATGCGGACTACTCTTCAAGACCCAGCCTTACGTGAAGATCCACTACCAGATCAAGCACCTCAACATGACGCGAGCACAGATCAAGGCGCAGAGGAAACTCAACAAAGACCAGATCATCCAGAACAATATAAACAAGAGTACGAACTGGGAACCTCACATTGCCAACAAGAAGACTGGGTCAGTTTCCAATGAGACTGAGGAAGATCCTCTCTTGGTGCAAGAGGGAGAGGTACCGATTAAAATGGAGACAGATGAAGAGGAATTTAAAATCCCGACTTTCCAAACTTTCATTGATATTACTAGGGAATGA
- Protein Sequence
- MSIGQIKEFDVKSGTWSVYVDRLDMYFKVNKIEEDTKLPTLIAVMGDEAYELLGNLASPQKPAELRYDRAVELLRQHLEPTPSVLAERYRFRQRRQNGEETIATYVAELKKLARYCKFKDGLNDNLRDQFVCGLRSDVIRQRLFAEADTITYTEAVRLASSLEAAERDAAAVEATATVGSGGDATGGRPEQAVHALGGVEHVGAGARRQAPRSARSSRGRHSSGHSLRPHAGGNGTSNGGRPFHCWGCGATEHSYSDCRFRNYVCSNCRRPGHLRRVCPGRAGNGVGGAAGASHPTVNYGDASDGLPGQGSIPESDFHQLCLNDYRAVSLTICIDKINIPMEIDTGTAISCISKETYRKYFSAHKLEYSELILNFYDGSKIKPVGMFKPVVMYGDCRKQLELFVIEGGTTSLLGRQWLTELNIQIPVYSRCHNMNGKGFNMSNEIDNLLNRYKELFSGGLGRYTGGKATLRVREGATPVFHRARPVPYALLSRLDAALDAMLHDGIIEPVDCSDWASPLVPVNKPDGSLRICADYKATLNPVLITDRYPLPRIEDLLVKLSGASYFSKIDLTQAYNQIELDDSKEYTVINTHRGLYRYNRLVFGLSSSPGIFQRIMCNLLKGIPNVEIFLDDIIIAGKTQQEHLEALEKVLSAQVLAHYEPSKQLILTCDASARGIGGVLTQPGERGERPVAYASRTLTEAEKNYSQIHREALAIIFCVNKFHQYLYGRNFILRTDHKPLVSIFGPNTGIPTMVASRMQRWAIILSAYSFTIEYVRTDQNGADGFSRLPVVDKQTSMVEPPEQTHLHFVQQSLLLDYNDIKRQTLRDVELSKILSYVRDGWPKDCELSNLKPYFNRKNELYEELGCIMWGHRLVVPETCRDKVLLLLHEPHMGIVKSKALARSYVWWPGVDEAVERMCRGCETCAAQADAPPRQAPRMWAWPSRPWSRLHIDYLGPIGGRTYLVVVDATSKWLEVFNVSNTSAYNLIDRLMELFSRWGLPRQIVSDNGTQFASKEFQEFTKTNGIEHIFTAPYHPASNGLAENSVRTVKKVIKKAMLEKQNIDRALWTFLLHYRNIEHSTTGESPSMILLGRHIRTRLDIIKPDRQNRVHKAQQRQVENAEGGKRSIGGEGADVWYRQFLKGERWLPGQVVECLGPSNYQVKGGGGETVHRHIDQLRRRTGGRLSLVASGPSNVERSHTDSQAMSAESMTGSSCERTGAEESADRGGPSSREASPSQLTAEPEEPSEIQVALPQAPPTPQRAVRTTHNEEVRAKTVHLPVTCEICSRDYKNKASLKRHLLTHDEDVHCDICFEKCKNRITLGHHYLKVHNEKYVGAPEQTCPHCDRICATRAMLKRHMQRMHSDRTKKYQCDHCQRLYLTKGEVRAHITWSHMPAEARGGHACTCGRIFRSPSLLRDHKARFHAAEPPPRVHQCDHCEKAFANKQVLNRHKKSHSNEMYPCNECGLLFKTQPYVKIHYQIKHLNMTRAQIKAQRKLNKDQIIQNNINKSTNWEPHIANKKTGSVSNETEEDPLLVQEGEVPIKMETDEEEFKIPTFQTFIDITRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -