Mlor025763.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- Thap2
- Assembly
- GCA_029852875.1
- Location
- CM056806.1:6288970-6312324[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.088 7.7 8.0 1.0 1 23 592 614 592 614 0.98 2 10 0.2 18 6.9 4.1 1 23 621 643 621 643 0.98 3 10 0.077 6.7 8.2 1.7 1 23 647 669 647 669 0.97 4 10 0.0047 0.41 12.0 5.1 1 23 674 697 674 697 0.98 5 10 6.6e-05 0.0058 17.9 0.2 1 23 701 724 701 724 0.94 6 10 0.072 6.3 8.3 0.1 3 22 738 757 737 761 0.90 7 10 4.6 4e+02 2.6 0.1 2 19 844 860 843 860 0.83 8 10 6.6e-05 0.0058 17.9 3.1 1 23 870 892 870 892 0.98 9 10 0.00026 0.023 16.0 4.4 1 23 899 921 899 921 0.97 10 10 0.00057 0.05 14.9 1.6 1 23 927 950 927 950 0.96
Sequence Information
- Coding Sequence
- atGCCTGCTTGTTGTATTGCAACGTGTGGTGCAAGAAAGAACAAAAATCAACCTAAATTGACTTTGCATAGgtttCCCAAAAAAGAACCTTTGAGAAAAAAATGGTTAGAGGCTATCGGTAAAGTCAATATTAATACCAAATATAGAGAATGGTATGTCTGTTCGCTTCACTTCAATGAGAGCTGTTTTAATAGAACACTAGAGGTGATAAGGTTACGCGATGACTCTGTTCCCACAGAATTTTTGaaacgaCATCAGGATTTATCAGATTTAAGTGAAAGTGACACTATCGGAAAAGGTGATGATGATTCTGATGATACAACGACTGAGCTGGACCCATTGCAAATATCAGATGAAGAAACAGTGCAAAAAGAGGTATGTCGAGTGTGTCTAGCTTTGGATGTGAAAATGTTTGATATGAAGGACTTGAAGTTAACTGAGACGTTCCAGAATATCACGGGATTATCGGTAAGCGACGAAAAAGATTACACACTCCATCGCCTTTGCTGGGAATGTACATCGCGGCTCACAACGGCATCAACATTTAGAAACAAAGCGTTACTCAGCGATGCTCTACTAAAAAACATAGCAAGTATGAACAAAAGTGACATAGCCAATTTAAGACACATCTACCGTGATTCTCTCCAATCTTCCCTCACCACACAATCAGTCCTACATGAATTCGACAACGAAGAAATGGAATCAAACTCCGAAGAAATGGAATGTGTTAACTCCGAAGAAATGGAATGTGTTAACTCTGAAGAAATGGAATGTGTTAACTCCGAAGAAATGGAATGTGTTAACTCCGAAACAGATTTTGAAGACGATGAACCGTTAGTAAATTTACAAAAAGACGCTGAATCTGATCAGGGaggcaataaaaacaaatatataaaaaataaagacacaGAAGAAAATATTGAAGTATATAATAGTAGTAATGTTATAAGTGTAAATGAAGTTTTATCAAAAGCACCAATAAATGAAGATTGTTACTTAGTTATAGTAACAGGTGATGAAGATAGTAAAAGAAAGGTAGATGTGGTCGGTAATACTGGGGATAAATCTTTAAGTAAAGTGATTACACAGAGTCTTGTAGAAGCATCTGGTAATAAAGCTAAGAAGGTGACTTTTAAGGATGTTGGTGCTTTGTCTGAAGAAGGGAACAGGCTCAACGATTCGGAAAAACTGAAAAGTATTGCGTCAAAGCGAAAGAGTCACTCGGTGGCAGAAAGATCTgaggaaaccaaaaattcgtTAATCGTCCAAAACATAGTGACAGTTAACAGATTAAATAACCAATTAACTCTCGCTATATCATCAAAAAATTTGAAACCTAATAAAAGCATtacaatagaaaacaaaactccATCAACTTGCAAAGACGCCGTTAAAGACGAAAACAAAAAGAGATTAAAGAACGAAAACGGACTTAACGGCCCCGGATTTGACGATCCCGGATTTGACAGCGACGGAATTGCTGATACGGATGTTACTGATAAAAGTGACTCGTCAGAAGATGACCTATTGtctgataaagaaaattattcCTCAGATGATGGCCTTCCTTTagaaaaatgtaaagagagACCCAAATCCGCtagaataaaaaagataaaagatcAGTCAGGACCGAAGTATCGTCGAAAAGAAAGAGTGCGTCAAAATGATGATATGATCCGAAGTGTTTTTACGATAACGGATTTGACATATGAAGAACAGATGGCGGAAATcatgaaaagaaaagaaactccGCAATAtataaattcttattttaaatgtacGCTCTGTTTTAAAGGGTTTTTGGATGAAGAAGGTTATAATATCCATATGTTCAGGCATACTAATcaaTTTGGCGACTACGAATGCCAGATCTGTAAGATGCATTTCCAGTACCGGCGTATTTTGAATACCCACATGACGAAACATACCCAGAGGTACAGCTGTAAGGAGTGTACCTTCGTCACCACACATCGGCAGACGGCGACTGCTCACGCTCGCTGGCACAAAGGGACTAAATACCAGTGCCCACATTGTCCACAGCAGTTCGAGCATCACACAACATACATGGGTCACATCCGCATCAAGCACGCGTCGGACTTCGCCTGTGAGATCTGCGGGTACTCCTTCGTCAGCGCCAAGGGTTTACAGCAGCATAAGAACTTGAAACATCGACTTGTCAAAGAAGAGATCCCTGAAGACGGTCCGTACTGCGAGCCATGTAACGTGCGGTTCATATCATCAGAAGCGTACACTCGACATATCAGAGTTTCAGCTAAGCATAACACAGacaaaaattcaAGGGAACCAAATACACCAAAGAAGAAAGTCTACAAAAGTACAGATAAGGTCAGAACCAAACGGGTGCGTTCCAGTCCAACTTCGAAAAAGGACAAGAAGAAGGAAGGCCTCATACCTTGCGAACAATGTAGCGTCCAGTTAAAAGGTACGCAGGCGTACAACATTCACTTCAGACGAATGCACCCCGACAAGAATCGAACCAAATACCCCACCATGAGGCAACCGAGCATGTGTGAACTTTGTGGGAGAATGGTCAGTTCATTCCAACTGAAGTACCACTGCTGTCCACAAAACCAAGAGCGTCCCTTCAGCTGCGAGTCCTGCGGTAAGACCTTCAAGGCGCGGTCCAGCCTGCACATGCATCAGCGCCTGCACAGCAAGGAACGCACCACATACCCTTGTTCAATCTGCGGGAAGCATTTCTCCAATATCACAAATCGGTGCAGGCATATGTTTATCCACACAGGGCTAAAACCTCACAAGTGTGAGATATGTGACAAGAACTTCAGGACCGTGACCGAGAAGAGGGCACACATCAACTACGTGCATCTGAAGAAACCCTGGCCCAAGCGCAATAGGGACAAGAGAAAAACGGACACGAGATAG
- Protein Sequence
- MPACCIATCGARKNKNQPKLTLHRFPKKEPLRKKWLEAIGKVNINTKYREWYVCSLHFNESCFNRTLEVIRLRDDSVPTEFLKRHQDLSDLSESDTIGKGDDDSDDTTTELDPLQISDEETVQKEVCRVCLALDVKMFDMKDLKLTETFQNITGLSVSDEKDYTLHRLCWECTSRLTTASTFRNKALLSDALLKNIASMNKSDIANLRHIYRDSLQSSLTTQSVLHEFDNEEMESNSEEMECVNSEEMECVNSEEMECVNSEEMECVNSETDFEDDEPLVNLQKDAESDQGGNKNKYIKNKDTEENIEVYNSSNVISVNEVLSKAPINEDCYLVIVTGDEDSKRKVDVVGNTGDKSLSKVITQSLVEASGNKAKKVTFKDVGALSEEGNRLNDSEKLKSIASKRKSHSVAERSEETKNSLIVQNIVTVNRLNNQLTLAISSKNLKPNKSITIENKTPSTCKDAVKDENKKRLKNENGLNGPGFDDPGFDSDGIADTDVTDKSDSSEDDLLSDKENYSSDDGLPLEKCKERPKSARIKKIKDQSGPKYRRKERVRQNDDMIRSVFTITDLTYEEQMAEIMKRKETPQYINSYFKCTLCFKGFLDEEGYNIHMFRHTNQFGDYECQICKMHFQYRRILNTHMTKHTQRYSCKECTFVTTHRQTATAHARWHKGTKYQCPHCPQQFEHHTTYMGHIRIKHASDFACEICGYSFVSAKGLQQHKNLKHRLVKEEIPEDGPYCEPCNVRFISSEAYTRHIRVSAKHNTDKNSREPNTPKKKVYKSTDKVRTKRVRSSPTSKKDKKKEGLIPCEQCSVQLKGTQAYNIHFRRMHPDKNRTKYPTMRQPSMCELCGRMVSSFQLKYHCCPQNQERPFSCESCGKTFKARSSLHMHQRLHSKERTTYPCSICGKHFSNITNRCRHMFIHTGLKPHKCEICDKNFRTVTEKRAHINYVHLKKPWPKRNRDKRKTDTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028369;
- 90% Identity
- iTF_01028369;
- 80% Identity
- iTF_01028369;