Mlor026719.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056807.1:6732470-6737233[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.12 10 7.7 0.7 1 23 61 83 61 83 0.95 2 16 1.4 1.3e+02 4.2 0.1 2 22 112 132 111 134 0.88 3 16 0.011 0.93 10.9 0.6 2 23 155 177 154 177 0.94 4 16 0.0025 0.22 12.9 4.8 1 23 182 205 182 205 0.96 5 16 0.0041 0.35 12.2 3.7 1 23 210 233 210 233 0.96 6 16 0.31 27 6.3 0.2 2 23 236 258 235 258 0.92 7 16 0.41 36 5.9 1.0 2 21 265 284 264 285 0.92 8 16 0.12 11 7.6 0.4 1 23 343 366 343 366 0.90 9 16 0.0096 0.84 11.1 0.1 3 23 395 416 393 416 0.94 10 16 0.24 21 6.7 0.2 3 23 440 462 439 462 0.91 11 16 0.00047 0.041 15.2 0.6 3 20 469 486 467 490 0.90 12 16 0.057 5 8.6 0.3 1 23 495 518 495 518 0.94 13 16 3.4e-05 0.003 18.8 0.3 2 23 524 546 524 546 0.96 14 16 0.00029 0.026 15.8 4.0 1 23 550 573 550 573 0.97 15 16 0.00027 0.023 16.0 2.1 1 23 579 601 579 601 0.98 16 16 0.16 14 7.2 3.1 1 23 607 630 607 630 0.93
Sequence Information
- Coding Sequence
- ATGTTAATAAGTTCTAAAGAGATTCTAGCCATCAACAGTTTCTCGGACACAATAGTTTTCAAATGTAAAAAACCGAGGAAAAGCAAGGATAACAAAGAAGCATCATCAATGAGGAGGCGACGGAACCTACAAATTCTATTCAACAATACATCTATCATTCCTTTTAAATGGCGGGGGAAGTATTTGTGTTTCTATTGCAGCAAAGATGTCGCCGAATACACTGAGTTAAGAAATCATACAAAAGAACACGGCAATTGCTCCATAAACGACCATTCCCTTAAGGTCCTCAAAGGAGGAAAAAGCATGGAAATTAAAATAGACATTTCAATGATCACTTGTGAAGTATGCACGGAGACATTAGCTACCTTCGACGAAATTATCAATCATTTATTCGACAAACATGAACTCGAGTACGATAAGGAAGTAGAAATGGCTATTGAGGAATATAAGCTTGCTGATCTCAGTTGCACCGGATGCTCTGAAAAGTTCACGTACTTTGGTTACCTTGTCTCCCATGtcaataacaaacatccaaagaaCTGCCACGTTTGCGAAAAGTGCAACCAAAAGTTCAATAAAACGAGAGATCTATTCTCTCACATGAAAAATTATCACCGAGAAGGAGGGTATCAATGCGAAATGTGTCACCAAACCTTCAGCtcgttaaatattttaagaaaacacCGAAATAACAGACATTTAACACGATGCAACATATGCAATTTGAAACTACCCTCAGCTGCGTTAAGACAGAAACACCTCGAATTAGAACATCCTGATGACGGGTCTCTACAATGTGACGCTTGCTTGAAAGAGTTCCATACGAAGCAAGGCCTAAAAATGCACTCAAGGAAATGTAAAGGAGAAGAATTCGGAATCGCCATCAAAGAAGAACACGTTGCCATGGACTTAGACCTGAACTACGAAGATCGATCCAATAAAACTTGCGTTAAACAAATCAGACAAAATATAGTTACAGTTATAAACATGTCTACAGCAATACCTTTTAGTTTTTACAAGAATAGGTTCAACTGCTTTTACTGCTCCAAAGATTTCCTCGATTCAGAGTTGTTGAGGGAACACGCGGAGTTAGAACATCCATTTTGCGATGTCAAAGCGAAATGCATTAGGAAGTGTAGGGAATCCGTTTCTTGCGTCAAAATCGATGTTTCAAAACTCGCTTGCAAAGTCTGCTATGAAACATTAACCGATTTGGATCATCTAATCGATCATTTAATAGTGGAACACAATGCGAATTACGATAAATCGATAACAACATGTCTACAACCTTATAAGCTAGTCAAAGACAACATGGCTTGTCCGCTTTGCACAGATGTTGTATTCAACTTCTTCGGAACGCTTCTAAAACACATGAACACGGAGCATACGAACAATAATATCATATGCGTTTATTGCGGCCAAACGTTCCGTAGGGACCAAAACTTACGTGTCCACATTTGGAGGCATCACAGAGTTGGGAGGTTTAAATGTAACATTTGTGATGCTGACTGCAACATTCCTTCTCGCTTGTACATGCACATGGCTGAAGCACACGGCGTTAAAGCCGCTAAATGCCCGAAATGCCCCGAGTCTTTCTCCACGCAGTACGAGAGGCAGAAACATTTAATCGTCGCCCATAATTCAGGCCACAAATGCTCTGTCTGTGGGAAGCTTTTTACCAGAATGTCTTTCATGAATAACCATTTAAGAAGAACTCATATGAAAGAGAAGAAGTACGAATGTCAAGTTTGCTTTACGAGGTTCTTTAACACTGCTCTTTTGAAGAAGCATATGTTGAAGCATAGTGGACAGAAGAAATATTGTTGCGATATTTGTGGGGAAAGGTTCTACTGGCGTAAAACTATGAAGACGCATCGAGATAGGTTGCATGCTCGACAGACTAATCCTCCCCCTCCTCCTGGGCCGGTTATACCGACTATACCAAGACGGGAGGGGGTTATAAAGAGATTATATGATGTTTGCAACGACATATAG
- Protein Sequence
- MLISSKEILAINSFSDTIVFKCKKPRKSKDNKEASSMRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDVAEYTELRNHTKEHGNCSINDHSLKVLKGGKSMEIKIDISMITCEVCTETLATFDEIINHLFDKHELEYDKEVEMAIEEYKLADLSCTGCSEKFTYFGYLVSHVNNKHPKNCHVCEKCNQKFNKTRDLFSHMKNYHREGGYQCEMCHQTFSSLNILRKHRNNRHLTRCNICNLKLPSAALRQKHLELEHPDDGSLQCDACLKEFHTKQGLKMHSRKCKGEEFGIAIKEEHVAMDLDLNYEDRSNKTCVKQIRQNIVTVINMSTAIPFSFYKNRFNCFYCSKDFLDSELLREHAELEHPFCDVKAKCIRKCRESVSCVKIDVSKLACKVCYETLTDLDHLIDHLIVEHNANYDKSITTCLQPYKLVKDNMACPLCTDVVFNFFGTLLKHMNTEHTNNNIICVYCGQTFRRDQNLRVHIWRHHRVGRFKCNICDADCNIPSRLYMHMAEAHGVKAAKCPKCPESFSTQYERQKHLIVAHNSGHKCSVCGKLFTRMSFMNNHLRRTHMKEKKYECQVCFTRFFNTALLKKHMLKHSGQKKYCCDICGERFYWRKTMKTHRDRLHARQTNPPPPPGPVIPTIPRREGVIKRLYDVCNDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906432;
- 90% Identity
- iTF_01029535;
- 80% Identity
- -