Mlor023938.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- Zfa
- Assembly
- GCA_029852875.1
- Location
- CM056802.1:14478311-14482880[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.79 69 5.0 0.2 2 21 291 310 290 311 0.93 2 18 1.9 1.7e+02 3.8 1.3 2 23 330 351 329 351 0.92 3 18 0.5 43 5.7 1.9 2 21 386 404 385 405 0.93 4 18 0.00049 0.043 15.1 0.8 2 23 437 459 436 459 0.96 5 18 0.00043 0.038 15.3 0.3 1 23 465 488 465 488 0.97 6 18 0.13 12 7.5 0.1 1 20 492 511 492 513 0.93 7 18 0.00016 0.014 16.7 0.4 1 23 521 544 521 544 0.97 8 18 0.25 22 6.6 0.4 1 23 549 572 549 572 0.86 9 18 0.00011 0.0093 17.2 0.1 2 23 581 602 580 602 0.97 10 18 0.0092 0.81 11.1 0.4 1 23 609 631 609 631 0.97 11 18 0.27 24 6.5 1.9 2 23 637 657 637 657 0.96 12 18 8.6e-07 7.6e-05 23.8 1.2 2 23 663 684 663 684 0.97 13 18 9.1 8e+02 1.7 0.1 2 23 689 709 688 711 0.73 14 18 0.067 5.8 8.4 2.7 1 23 723 746 723 746 0.97 15 18 6.7e-05 0.0058 17.9 5.1 1 23 752 774 752 774 0.98 16 18 0.0039 0.34 12.3 0.7 3 23 781 801 780 801 0.97 17 18 0.73 64 5.2 1.0 1 23 807 830 807 830 0.93 18 18 0.0088 0.77 11.2 1.2 3 23 837 858 835 858 0.95
Sequence Information
- Coding Sequence
- ATGGCGAGAATACCTAAAAACCCTCGCACTCATTGCTATTTTGGATGTGAAGAAGGAGGTCCATTGCATCATTTTCCTAAGCCAGAGCGTAATAGGGAAAGGTTTGATGTCTGGAAAGAAGTGTTGGACGATGCCATCAAAATAAAAGGAGATGCATTTATTTACAACCAAATAAGATTATGTAATAAACATTTTGAGAATTACTACATATCTCCAAGCAAGTGTTTGACCAGAAATGCAGTGCCAACCTTGTATATTACATCagATATCACCAGCCCATCTGAAGCTGCAGAAGTATCTGTTGAGCCGGCTGCTTCAGTTACAATGTCGGAGGAGATGAGCAGCAACATGAAGCAAACGTTTGTGGAAGGTTTTATAAAGATGGACAGCTTCAAGTTGAAGCTTAAAAACGTTCTGCACAGCTCGAAGTTTTGTGGAATATGCTTGGACAGTAACGAAAGTATGAACAGCATCGATGAGGAGCTAGAGATTATTGCTAGTGAGCGAactcatgcgacgcgtgtgcgGGGGCTCGTCGATGTAGTGTTTAAAAAGGCCAATTACAGCCTAGCAAGTTCAAATATATGCAACAGCTGTTTGGAAAAGCTGATCCAGTCTTACATTTTCATAGAAACTGCTAAAGAAACGTCCCAAATTTTTGGCAATTATGTAAACGATTTATTTAGTATatctaataatatctttaatcaGTTACTGGAGTCcaaaacagaaattaaaaatatcgtaATTGAGTTGGATAGTAAAAGTCGTGATTCTCTTGTAGTAGAAGATGAACCTATTTTAGACACAGACCAAAATAATGAAACGTTGGAAGAACAAAATGATTCCACTCTTATAAGAAATACAGTCAGATGTGATAACTGTTCATTGAGGCTACCTTCAAACAAAactttagaaatacataaaatgaaatgtaaagGACAAACAAGACATTTAAAGGCACATCGTGAATCACATTACAAAGTAAAATGCAAGTTATGCCACAAATTAATAGTAAACAGCGAGTTGCTGGACCACTATAAAACGGACCATGAAGAATCCTTATTAAAGTGTTTGAAATGTGAATTATTTTATCCGTTACACACGCACCAAAGTCACACTGAAGTCTGCCGACAAATTAAAGAAGACAAACAGCAATGCTTGATGTGTcttaagacttttactgagaaCGAATTGAAGTCTCATATCTGCAAGTATAGTTGTCCAGAATGTGCGGAAGTACCTTGCATGCATTACAAGTACTTGAAGTCTTACAGAGAACAGATCTTAAACAATGCTGACAAAACGAAATGCGTTGACTGCGACTATGTTTGTAAAAGTAAAGAGGCATTACTTGAACACATAAACCGGGACCATTTAAACCATCACCCATACACATGTGATAAATGtggaaaacaattttattccaaaattgTCTTAGGAGCTCATATTCTCAGACTCCACGAGGACAGTTTTGTGTGCCAGTTCTGTGACTCTGAGTTCAGAAATATTAACAATTATGAAATTCACGTGGAATCCTGTGAAGATATAAAAAGGGAGTTTGCTTGTGAGAACTGTCCAGCCTCTTTTGATTTTCTTGATAGTTTGACGAACCATATGAAACGAAGACATAGCACAAAAATCTTCCCCTGTGGCGTTTGCAATAAAGTGTTCCTGAAATATTCCCAAAGAAAAGAGCATGTAGTTAAAGTTCACAGTGAGCTTGGAATGAAAATTGTAGAATGTGCTGTGTGCCAAGAATCATTTGATAACCAAGACGATCTGGTGCAGCATTTGAAGTCTCATGGTCCTGACGTAACGATATATCCATGTATGATCTGCGACACGGAGTATCAGACTTTGAAACAGTTTCAGGCACATAGCAAGATACACAAAGGACCATTTGCCACATGCCATGTTTGTGGTAAAGAAATGAGGGAGATCCTGCTGAAAAAGCATTTAACTACACATTCAAATCCAATAGAAACATGTGAAACATGTGGAAAATCTTTTCGAAAtaactacttattaaaaattcatCAGAAAATTCATTTAGAAAGAGTCCCTTGCCCTAAATGTGAGAAAATGATCAACCCAGCGAGATTGCCCAGCCATTTGCGAGGACATctgatgaaagaaaaaggaatgaAAAAACATGAGCCTAAATATAAATGTACCCTGTGTGAATATAAGACCTGGGACAATACACATCTAGAAAGTCATATGAATCAATACCACTTGAAAACAAAGCCCTATATCTGCCATATATGTAGCAAAGACTTCACTGGAAGACATTACCTGAGGCAACATATTAAAACACATAACGTGAACAGTGTTGCCTGCATGGTATGTCTGAAGAGTTTTGCCAATTCTACCCGCTTGAAGATGCATTTGCGTCTACACACAGGAGAAAAGCCATTCACTTGTGAAATTTGTGGCGATCAGTTTCGGTTAAGAAAAATTTTGACCATGCATAGGTTAAGGAAGCATTCAGACAAGACTATAATTTGTCCATTATGTTCAAATAAATTTCACACAAACAGAGATTTGAGAACACATGTGATGCGAGTGCATTGTAAGCAGAAAAATTTGAGATTTGATCCTCGACGTGTGAAAGGACTAGATAAGAAATACTATCATTTGTGTCAAGATACTAGAAGATTTAAAGATACTGATGAAGATGCtgagttttaa
- Protein Sequence
- MARIPKNPRTHCYFGCEEGGPLHHFPKPERNRERFDVWKEVLDDAIKIKGDAFIYNQIRLCNKHFENYYISPSKCLTRNAVPTLYITSDITSPSEAAEVSVEPAASVTMSEEMSSNMKQTFVEGFIKMDSFKLKLKNVLHSSKFCGICLDSNESMNSIDEELEIIASERTHATRVRGLVDVVFKKANYSLASSNICNSCLEKLIQSYIFIETAKETSQIFGNYVNDLFSISNNIFNQLLESKTEIKNIVIELDSKSRDSLVVEDEPILDTDQNNETLEEQNDSTLIRNTVRCDNCSLRLPSNKTLEIHKMKCKGQTRHLKAHRESHYKVKCKLCHKLIVNSELLDHYKTDHEESLLKCLKCELFYPLHTHQSHTEVCRQIKEDKQQCLMCLKTFTENELKSHICKYSCPECAEVPCMHYKYLKSYREQILNNADKTKCVDCDYVCKSKEALLEHINRDHLNHHPYTCDKCGKQFYSKIVLGAHILRLHEDSFVCQFCDSEFRNINNYEIHVESCEDIKREFACENCPASFDFLDSLTNHMKRRHSTKIFPCGVCNKVFLKYSQRKEHVVKVHSELGMKIVECAVCQESFDNQDDLVQHLKSHGPDVTIYPCMICDTEYQTLKQFQAHSKIHKGPFATCHVCGKEMREILLKKHLTTHSNPIETCETCGKSFRNNYLLKIHQKIHLERVPCPKCEKMINPARLPSHLRGHLMKEKGMKKHEPKYKCTLCEYKTWDNTHLESHMNQYHLKTKPYICHICSKDFTGRHYLRQHIKTHNVNSVACMVCLKSFANSTRLKMHLRLHTGEKPFTCEICGDQFRLRKILTMHRLRKHSDKTIICPLCSNKFHTNRDLRTHVMRVHCKQKNLRFDPRRVKGLDKKYYHLCQDTRRFKDTDEDAEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028603;
- 90% Identity
- iTF_01028603;
- 80% Identity
- -