Mlor023929.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- Zfa
- Assembly
- GCA_029852875.1
- Location
- CM056802.1:14414203-14418735[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.78 69 5.1 0.2 2 21 286 305 285 306 0.93 2 17 4.1 3.6e+02 2.8 1.8 2 23 325 346 324 346 0.92 3 17 0.49 43 5.7 1.9 2 21 381 399 380 400 0.93 4 17 0.00048 0.042 15.2 0.8 2 23 432 454 431 454 0.96 5 17 0.00043 0.037 15.3 0.3 1 23 460 483 460 483 0.97 6 17 0.13 11 7.5 0.1 1 20 487 506 487 508 0.93 7 17 5.3e-05 0.0046 18.2 0.4 1 23 516 539 516 539 0.97 8 17 0.25 22 6.6 0.4 1 23 544 567 544 567 0.86 9 17 0.00011 0.0093 17.2 0.1 2 23 576 597 575 597 0.97 10 17 0.0092 0.8 11.1 0.4 1 23 604 626 604 626 0.97 11 17 0.27 23 6.5 1.9 2 23 632 652 632 652 0.96 12 17 7.4e-07 6.5e-05 24.0 1.8 2 23 658 679 657 679 0.97 13 17 0.049 4.3 8.8 2.6 1 23 718 741 718 741 0.97 14 17 8.2e-05 0.0072 17.6 3.9 1 23 747 769 747 769 0.98 15 17 0.0039 0.34 12.3 0.7 3 23 776 796 775 796 0.97 16 17 1.3 1.1e+02 4.4 1.0 1 23 802 825 802 825 0.90 17 17 0.0087 0.77 11.2 1.2 3 23 832 853 830 853 0.95
Sequence Information
- Coding Sequence
- ATGACCAGCCCATCTGAAGCTGCAGAAGTATCTGTTGAGCCGGCTGCTTCAGTTACAATGTTGGAGGATATGACATATTACAAGGATATGAGCAGCAACATGAAGCAAACATTTGTGGAAGATATTTCAATTCATACAGAAACAGCACCTTCTTCAAAGGATATAGCGAAACAAATAGATGTTCAACCATCCACATCTCAGACAAACCCATTACTTTCAAAGGATGTACTGAAGCGGAAATCAAAAACAACAGcTCCTGAAAGTGTTGCGACGACCATGAATAAAACGGGGCAAGGGCAGAAAGCTGATGATCATGACCATAATGATAATGAGGATGATGGTCATCATCACCACAGTTTTATAAAGATGGACAGCTTCAAGTTGAAGCTCAAAAACGTTCTGCACAGCTCGAAGTTTTGTGGAATATGCTTGGACAGTAACGAAAGTATGAACAGCATCGATGAGGAGCTAGAGATTATTGCTAGTGAGCGAactcatgcgacgcgtgtgcgGGGGCTCGTCGATGTAGTGTTTGAAAAGGCCAATTACAGCCTAGCAAGTTCAAACATATGCAACAGCTGTTTGGAAAAGCTGATCCAGTCTTACATTTTCGTAGAAACTGCTAAAGAAACGTCCCAAATTTTTGGCAATTATGTAAACGATTTATTTAGTATatctaataatatctttaatcaGTTACTGGAGTCcaaaacagaaattaaaaatatcgtaATTGAGTTGGATAGTAAAAGTCGTGATTCTCTTGTAGTAGAAGATGAACCTACTCTAGACACAGACCAAAATAATGAAATGTTGGAAGAACAAAATGATTCCACTCTTGTAAGAAATACAGTCAGATGTGATAACTGTTCATTGAGGCTACCTTCAAACAAAactttagaaatacataaaatgaaatgtaaagGACAAAAAGAACATTTAAAGGCACATCGTGAATCACATTACAAAGTAAAATGCAAGTTCTGTCACAAATTAATTGTCAAGAGCGAGTTGCTGGACCACTATAAAATGGACCATGAAGAATCCTTATTGAAGTGTTTGAAATGTGAATTATTTTATCCGTTACACACGCACCAAAGTCACACTGAAGTCTGCCGACAAATTAAAGAAGACAAACAGCAATGCTTGATGTGTCTgaagacttttactgagaaCGAATTGAAGTCTCATATCTGCAAGTATAGTTGTCCAGAATGTACGGAAGTACCTTGCATGCATTACAAGTACTTGAAGTCTTACAGAGAACAGATCTTAAACAATGCTGACAAAACCAAATGCGTTGACTGCGACTATGTTTGTAAAAGTAAAGAGGCATTACTTGAACACATAAACCGGGACCATTTAAACCATCATCCATACACATGTGACAAATGtggaaaacaattttattccaaaattgTCTTAGGAGCTCATATTCTCAGACTCCACGAGGACAGTTTTGTGTGCCAGTTCTGTGACTCGGAGTTCAGAAATATTAACAATTATGAAATTCACGTGGAATCCTGTGAAGATATAAAAAGGGATTTTGCTTGTGAGAACTGTCCAGCCTCTTTTGATTTTCTTGATAATTTGACGAACCATATGAAACGAAGACATAGCACAAATATCTTCCCCTGTGGCGTTTGCAATAAAGTGTTCCTGAAATATTCCCAAAGAAAAGAGCATGTAGTTAAAGTTCACAGTGAGCTTGGATTGAAAATTGTAGAATGTGCTGTGTGCCAAGAATCATTTGATAACCAAGACGATCTGGTGCAGCATTTGAAGTCTCATGGTCCTGACGTAACGATATATCCATGTATGATCTGCGACACGGAGTATCAGACTTTGAAACAGTTTCAGGCACATAGCAAGATACACAAAGGACCATTTGCCACATGCCATGTTTGTGGTAAAGAAATGAGGGAGATCCtgctgaaaaaacatttaacTACACATTCAAATCCAATAAAAACATGTGAAACATGTGGAAAATCTTTTCGAAATaagtacttattaaaaattcatCAGAAAATTCATTTAGAAAGTGTCCCTTGTCCTAAATGTGAGAAAATGATCAACCCAGCGAGACTACCCAGTCATTTGCAAGGACATTTGATGAATGAAAAAGGAATGAAAAAACATGAGCCTAAATATAAATGTAACCTGTGTGAATATAAGACCTGGGACAATACACATCTAGAAAGTCATATGAATCAGTACCACTTGAAAACAAAGCCCTATATCTGCCATATATGCAGCAAAGACTTCGCTGGAAGACATTACCTGAGGCAACATATTAAAACACATAACGTGAACAGTGTTGCCTGCATGGTATGTCTGAAGAGTTTTGCCAATTCTACCCGCTTGAAGATGCATCTGCGTCTACACACAGGAGAAAAGCCATTCACTTGTGAAATTTGTGGCGATCAGTTTCGGTTAAGAAAAATTTTGACCATGCATAAGTTAAGGAAGCATTCAGACAAGACTATAATTTGTCCATTATGTTCAAATAAGTTTCACACAAACAGAGATTTGAGAACGCATGTGATGCGAGTGCATTGTAAGCAGCAAAATATGAGATTTGATCCTCGACGTGTGAAAGGACTAGATAAGAAATACTATCATTTGTGTCAAGATACTAGAAGATTTAAAGATACTGATGAAGATGCtgagttttaa
- Protein Sequence
- MTSPSEAAEVSVEPAASVTMLEDMTYYKDMSSNMKQTFVEDISIHTETAPSSKDIAKQIDVQPSTSQTNPLLSKDVLKRKSKTTAPESVATTMNKTGQGQKADDHDHNDNEDDGHHHHSFIKMDSFKLKLKNVLHSSKFCGICLDSNESMNSIDEELEIIASERTHATRVRGLVDVVFEKANYSLASSNICNSCLEKLIQSYIFVETAKETSQIFGNYVNDLFSISNNIFNQLLESKTEIKNIVIELDSKSRDSLVVEDEPTLDTDQNNEMLEEQNDSTLVRNTVRCDNCSLRLPSNKTLEIHKMKCKGQKEHLKAHRESHYKVKCKFCHKLIVKSELLDHYKMDHEESLLKCLKCELFYPLHTHQSHTEVCRQIKEDKQQCLMCLKTFTENELKSHICKYSCPECTEVPCMHYKYLKSYREQILNNADKTKCVDCDYVCKSKEALLEHINRDHLNHHPYTCDKCGKQFYSKIVLGAHILRLHEDSFVCQFCDSEFRNINNYEIHVESCEDIKRDFACENCPASFDFLDNLTNHMKRRHSTNIFPCGVCNKVFLKYSQRKEHVVKVHSELGLKIVECAVCQESFDNQDDLVQHLKSHGPDVTIYPCMICDTEYQTLKQFQAHSKIHKGPFATCHVCGKEMREILLKKHLTTHSNPIKTCETCGKSFRNKYLLKIHQKIHLESVPCPKCEKMINPARLPSHLQGHLMNEKGMKKHEPKYKCNLCEYKTWDNTHLESHMNQYHLKTKPYICHICSKDFAGRHYLRQHIKTHNVNSVACMVCLKSFANSTRLKMHLRLHTGEKPFTCEICGDQFRLRKILTMHKLRKHSDKTIICPLCSNKFHTNRDLRTHVMRVHCKQQNMRFDPRRVKGLDKKYYHLCQDTRRFKDTDEDAEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028603;
- 90% Identity
- iTF_01028603;
- 80% Identity
- -