Mlor023937.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- Zfa_5
- Assembly
- GCA_029852875.1
- Location
- CM056802.1:14461112-14463604[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.64 56 5.3 0.2 2 21 163 182 162 183 0.93 2 19 9.7 8.5e+02 1.6 0.6 12 23 187 198 186 198 0.91 3 19 3.4 3e+02 3.1 1.8 2 23 202 223 201 223 0.92 4 19 0.4 35 6.0 1.9 2 21 258 276 257 277 0.93 5 19 0.00039 0.034 15.4 0.8 2 23 309 331 308 331 0.96 6 19 0.00035 0.03 15.6 0.3 1 23 337 360 337 360 0.97 7 19 0.11 9.4 7.8 0.1 1 20 364 383 364 385 0.93 8 19 0.00013 0.011 17.0 0.4 1 23 393 416 393 416 0.97 9 19 0.21 18 6.9 0.4 1 23 421 444 421 444 0.86 10 19 8.6e-05 0.0075 17.5 0.1 2 23 453 474 452 474 0.97 11 19 0.0075 0.65 11.4 0.4 1 23 481 503 481 503 0.97 12 19 0.22 19 6.8 1.9 2 23 509 529 509 529 0.96 13 19 6e-07 5.3e-05 24.3 1.8 2 23 535 556 534 556 0.97 14 19 6.6 5.8e+02 2.1 0.1 2 23 561 581 560 582 0.76 15 19 0.04 3.5 9.1 2.6 1 23 595 618 595 618 0.97 16 19 6.7e-05 0.0059 17.9 3.9 1 23 624 646 624 646 0.98 17 19 0.014 1.2 10.6 0.7 3 23 653 673 652 673 0.97 18 19 1.3 1.1e+02 4.4 0.7 1 23 679 702 679 702 0.87 19 19 0.019 1.7 10.1 2.3 3 23 709 730 707 730 0.94
Sequence Information
- Coding Sequence
- ATGGACAGCTTCAAGTTGAAGCTCAAAAACGTTCTGCACAGCTCGAAGTTTTGTGGAATATGCTTGGACAGTAACGAAAGTATGAACAGCATCGATGAGGAGCTAGAGATTATTGCTAGTGAGCGAactcatgcgacgcgtgtgcgGGGACTCGTCGATGTAGTGTTTAAAAAGGCCAATTACAGCCTAGCAAGTTCAAACATATGCAACAGCTGTTTGGAAAAGCTGATCCAGTCTTACATTTTCGTAGAAACTGCTAAAGAAACGTCCCAAATTTTTGGCGATTATGTAAACGATTTATTTAGTATATCTGATAATATCTTTAATCAGTTACAAGAGTCcaaaacagaaattaaaaatatcgtaATTGAGTTGGATAGTAAAAGTCGTGATTCTCTTGTAGTAGAAGATGAACCTATTCTAGACACAGACCAAAATAATGAAATGTTGGCAGAACAAAATGATTCCACTCTAAGAAATACAGTCAGATGTGATAACTGTTCATTGAGGCTACCTTCAAACAAAactttagaaatacataaaatgaaatgtaaagGACAAAAAGAACATTTAAAGGCACATCGTGAATCACATTACAAAGTAAAATGCAAGTTCTGTCACAAATTAATTGTCAAGAGCGAGTTGCTGGACCACTATAAAATGGACCATGAAGAATCCTTATTAAAGTGTTTGAAATGTGAATTATTTTATCCGTTACACACGCACCAAAGTCACACTGAAGTCTGCCGACAAATTAAAGAAGACAAACAGCAATGCTTGATGTGTCTgaagacttttactgagaaCGAATTGAAGTCTCATATCTGCAAGTATAGTTGTCCAGAATGTGCGGAAGTACCTTGCATGCATTACAAGTACTTGAAGTCTTACAGAGAACAGATCTTAAACAATGCTGACAAAACGAAATGCGTTGACTGCGACTATGTTTGTAAAAGTAAAGAGGCATTACTTGAACACATAAACCGGGACCATTTAAACCATCATCCGTACACATGTGATAAATGtggaaaacaattttattccaaaattgTCTTAGGAGCTCATATTCTCAGACTCCACGAGGACAGTTTTGTGTGCCAGTTCTGTGACTCGGAGTTCAGAAATATTAACAATTATGAAATTCACGTGGAATCCTGTGAAGATATAAAAAGGGAGTTTGCTTGTGAGAACTGTCCAGCCTCTTTTGATTTTCTTGATAGTTTGACGAACCACATGAAACGAAGACATAGCACAAATATCTTCCCCTGTGGCGTTTGCAATAAAGTGTTCCTGAAATATTCCCAAAGAAAAGAGCATGTAGTTAAAGTTCACAGTGAGCTTGGAATGAAAATTGTAGAATGTGCTGTGTGCCAAGAATCATTTGATAACCAAGACGATCTGGTGCAGCATTTGAAGTCTCATGGTCCTGACGTAACGATATATCCATGTATGATCTGCGACACGGAGTATCAGACTTTGAAACAGTTTCAGGCACATAGCAAGATACACAAAGGACCATTTGCCACATGCCATGTTTGTGGTAAAGAAATGAGGGAGATCCtgctgaaaaaacatttaacTACACATTCAAACCCAATAAAAACATGTGAAACATGTGGAAAATCTTTTCGAAATaagtacttattaaaaattcatCAGAAAATTCATTTAGAAAATGTCCCTTGTCCTAAATGTGAGAAAATGATCAACCCAGCGAAACTACCCAGCCATTTGCAAGGACATTTGATGaatgaaaaagaaatgaaaaaacatGAGCCTAAATATAAATGTAACCTGTGTGAATATAAGACCTGGGACAATACACATCTAGAAAGTCATATGAATCAATACCACTTGAAAACAAAGCCCTATATCTGCCATATATGCAGCAAAGACTTCGCTGGAAGACATTACCTGAGGCAACATATTAAAACACATAACGTGAACAGTGTTGCCTGCATGGTATGTCTGAAGAGTTTTGCCAATACTACCCGCTTGAAGATGCATCTGCGTCTACACACAGGAGAAAAGCCATTCACTTGTGAAATTTGTGGCGATCAGTTTCGGTTAAGAAATATTTTGACCATGCATAAGTTAAGGAAGCATTCAGATAAGACTATATTTTGTCCATTATGTTCAAATAAATTTCACACAAACAGAGATTTGAGAAAACATGTGACGCGAGTGCATTGTAAGCAGAAAAAGGAGACTaagcgaaagtggtctatgaaccaatag
- Protein Sequence
- MDSFKLKLKNVLHSSKFCGICLDSNESMNSIDEELEIIASERTHATRVRGLVDVVFKKANYSLASSNICNSCLEKLIQSYIFVETAKETSQIFGDYVNDLFSISDNIFNQLQESKTEIKNIVIELDSKSRDSLVVEDEPILDTDQNNEMLAEQNDSTLRNTVRCDNCSLRLPSNKTLEIHKMKCKGQKEHLKAHRESHYKVKCKFCHKLIVKSELLDHYKMDHEESLLKCLKCELFYPLHTHQSHTEVCRQIKEDKQQCLMCLKTFTENELKSHICKYSCPECAEVPCMHYKYLKSYREQILNNADKTKCVDCDYVCKSKEALLEHINRDHLNHHPYTCDKCGKQFYSKIVLGAHILRLHEDSFVCQFCDSEFRNINNYEIHVESCEDIKREFACENCPASFDFLDSLTNHMKRRHSTNIFPCGVCNKVFLKYSQRKEHVVKVHSELGMKIVECAVCQESFDNQDDLVQHLKSHGPDVTIYPCMICDTEYQTLKQFQAHSKIHKGPFATCHVCGKEMREILLKKHLTTHSNPIKTCETCGKSFRNKYLLKIHQKIHLENVPCPKCEKMINPAKLPSHLQGHLMNEKEMKKHEPKYKCNLCEYKTWDNTHLESHMNQYHLKTKPYICHICSKDFAGRHYLRQHIKTHNVNSVACMVCLKSFANTTRLKMHLRLHTGEKPFTCEICGDQFRLRNILTMHKLRKHSDKTIFCPLCSNKFHTNRDLRKHVTRVHCKQKKETKRKWSMNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028603;
- 90% Identity
- iTF_01028603;
- 80% Identity
- -