Mlor023930.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- Zfa
- Assembly
- GCA_029852875.1
- Location
- CM056802.1:14419822-14422320[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.64 56 5.3 0.2 2 21 164 183 163 184 0.93 2 18 9.7 8.5e+02 1.6 0.6 12 23 188 199 187 199 0.91 3 18 2.1 1.8e+02 3.7 2.0 2 23 203 224 202 224 0.94 4 18 0.12 11 7.6 2.1 2 21 259 277 258 278 0.93 5 18 0.00039 0.034 15.4 0.8 2 23 310 332 309 332 0.96 6 18 0.00035 0.03 15.6 0.3 1 23 338 361 338 361 0.97 7 18 0.11 9.4 7.8 0.1 1 20 365 384 365 386 0.93 8 18 4.3e-05 0.0038 18.5 0.4 1 23 394 417 394 417 0.97 9 18 0.21 18 6.9 0.4 1 23 422 445 422 445 0.86 10 18 8.6e-05 0.0075 17.5 0.1 2 23 454 475 453 475 0.97 11 18 0.0075 0.66 11.4 0.4 1 23 482 504 482 504 0.97 12 18 0.22 19 6.8 1.9 2 23 510 530 510 530 0.96 13 18 6e-07 5.3e-05 24.3 1.8 2 23 536 557 535 557 0.97 14 18 0.04 3.5 9.1 2.6 1 23 596 619 596 619 0.97 15 18 6.7e-05 0.0059 17.9 3.9 1 23 625 647 625 647 0.98 16 18 0.0031 0.28 12.6 0.7 3 23 654 674 653 674 0.97 17 18 1 92 4.7 1.0 1 23 680 703 680 703 0.90 18 18 0.0067 0.58 11.6 1.5 3 23 710 731 708 731 0.94
Sequence Information
- Coding Sequence
- ATGGACAGCTTCAAGTTGAAGCTCAAAAACGTTCTGCACAGCTCGAAGTTTTGTGGAATATGCTTGGACAGTAACGAAAGTATGAACAGCATCGATGAGGAGCTAGAGATTATTGCTAGTGAGCGAactcatgcgacgcgtgtgcgGGGGCTCGTCGATGTAGTGTTTAAAAAGGCCAATTACAGCCTAGCAAGTTCAAACATATGCAACAGCTGTTTGGAAAAGCTGATCCAGTCTTACATTTTCGTAGAAACTGCTAAAGAAACGTCCCAAATTTTTGGCAATTATGTAAACGATTTATTTAGTATatctaataatatctttaatcaGTTACTGGAGTCcaaaacagaaattaaaaatatcgtaATTGAGTTGGATAGTAAAAGTCGTGATTCTCTTGTAGTAGAAGATGAACCTACTCTAGACACAGACCAAAATAATGAAATGTTGGAAGAACAAAATGATTCCACTCTTGTAAGAAATACAGTCAGATGTGATAACTGTTCATTGAGGCTACCTTCAAACAAAactttagaaatacataaaatgaaatgtaaagGACAAAAAGAACATTTAAAGGCACATCGTGAATCACATTACAAAGTAAAATGCAAGTTCTGTCACAAATTAATTGTCAAGAGCGAGTTGCTGGACCACTATAAAACGGACCATGAAGAATCCTTATTGAAGTGTTTGAAATGTGAATTATTTTATCCGTTACACACGCACCAAAGTCACACTGAAGTCTGCCGACAAATTAAAGAAGACAAACAGCAATGCTCGATGTGTCTgaagacttttactgagaaCGAATTGAAGTCTCATATCTGCAAGTATAGTTGTCCAGAATGTACGGAAGTACCTTGCATGCATTACAAGTACTTGAAGTCTTACAGAGAACAGATCTTAAACAATGCTGACAAAACCAAATGCGTTGACTGCGACTATGTTTGTAAAAGTAAAGAGGCATTACTTGAACACATAAACCGGGACCATTTAAACCATCATCCGTACACATGTGATAAATGtggaaaacaattttattccaaaattgTCTTAGGAGCTCATATTCTCAGACTCCACGAGGACAGTTTTGTGTGCCAGTTCTGTGACTCGGAGTTCAGAAATATTAACAATTATGAAATTCACGTGGAATCCTGTGAAGATATAAAAAGGGAGTTTGCTTGTGAGAACTGTCCAGCCTCTTTTGATTTTCTTGATAATTTGACGAACCATATGAAACGAAGACATAGCACAAATATCTTCCCCTGTGGCGTTTGCAATAAAGTGTTCCTGAAATATTCCCAAAGAAAAGAGCATGTAGTTAAAGTTCACAGTGAGCTTGGAATGAAAATTGTAGAATGTGCTGTGTGCCAAGAATCATTTGATAACCAAGACGATCTGGTGCAGCATTTGAAGTCTCATGGTCCTGACGTAACGATATATCCATGTATGATCTGCGACACGGAGTATCAGACTTTGAAACAGTTTCAGGCACATAGCAAGATACACAAAGGACCATTTGCCACATGCCATGTTTGTGGTAAAGAAATGAGGGAGATCCtgctgaaaaaacatttaacTACACATTCAAACCCAATAAAAACATGTGAAACATGTGGAAAATCTTTTCGAAATaagtacttattaaaaattcatCAGAAAATTCATTTAGAAAGTGTCCCTTGTCCTAAATGTGAGAAAATGATCAACCCAGCGAGACTACCCAGCCATTTGCAAGGACATTTGATGAATGAAAAAGGAATGAAAAAACATGAGCCTAAATATAAATGTAACCTGTGTGAATATAAGACCTGGGACAATACACATCTAGAAAGTCATATGAATCAATACCACTTGAAAACAAAGCCCTATATCTGCCATATATGCAGCAAAGACTTCGCTGGAAGACATTACCTGAGGCAACATATTAAAACACATAACGTGAACAGTGTTGCCTGCATGGTATGTCTGAAGAGTTTTGCCAATTCTACCCGCTTGAAGATGCATCTGCGTCTACACACAGGAGAAAAGCCATTCACTTGTGAAATTTGTGGCGATCAGTTTCGGTTAAGAAAAATTTTGACCATGCATAAGTTAAGGAAGCATTCAGACAAGACTATAATTTGTCCATTATGTTCAAATAAATTCCACACAAACAGAGATTTGAGAAGACATGTGACGCGAGTGCATTGTAAGCAGAaaaaggagactgagcgaaagtggtctatgaaccaatag
- Protein Sequence
- MDSFKLKLKNVLHSSKFCGICLDSNESMNSIDEELEIIASERTHATRVRGLVDVVFKKANYSLASSNICNSCLEKLIQSYIFVETAKETSQIFGNYVNDLFSISNNIFNQLLESKTEIKNIVIELDSKSRDSLVVEDEPTLDTDQNNEMLEEQNDSTLVRNTVRCDNCSLRLPSNKTLEIHKMKCKGQKEHLKAHRESHYKVKCKFCHKLIVKSELLDHYKTDHEESLLKCLKCELFYPLHTHQSHTEVCRQIKEDKQQCSMCLKTFTENELKSHICKYSCPECTEVPCMHYKYLKSYREQILNNADKTKCVDCDYVCKSKEALLEHINRDHLNHHPYTCDKCGKQFYSKIVLGAHILRLHEDSFVCQFCDSEFRNINNYEIHVESCEDIKREFACENCPASFDFLDNLTNHMKRRHSTNIFPCGVCNKVFLKYSQRKEHVVKVHSELGMKIVECAVCQESFDNQDDLVQHLKSHGPDVTIYPCMICDTEYQTLKQFQAHSKIHKGPFATCHVCGKEMREILLKKHLTTHSNPIKTCETCGKSFRNKYLLKIHQKIHLESVPCPKCEKMINPARLPSHLQGHLMNEKGMKKHEPKYKCNLCEYKTWDNTHLESHMNQYHLKTKPYICHICSKDFAGRHYLRQHIKTHNVNSVACMVCLKSFANSTRLKMHLRLHTGEKPFTCEICGDQFRLRKILTMHKLRKHSDKTIICPLCSNKFHTNRDLRRHVTRVHCKQKKETERKWSMNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028603;
- 90% Identity
- iTF_01028603;
- 80% Identity
- -