Mlor025423.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056805.1:11987748-11989331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0001 0.009 17.3 2.3 3 23 189 210 185 210 0.92 2 10 3.9 3.4e+02 2.9 2.1 1 23 216 238 216 238 0.94 3 10 0.0043 0.38 12.2 1.1 2 23 245 266 244 266 0.96 4 10 8.2e-05 0.0072 17.6 0.2 1 22 271 292 271 292 0.95 5 10 0.012 1 10.8 0.3 2 23 311 332 310 332 0.95 6 10 7.3e-06 0.00064 20.9 3.0 1 23 339 361 339 361 0.97 7 10 1.9e-06 0.00017 22.7 0.5 1 23 367 390 367 390 0.97 8 10 0.00068 0.059 14.7 0.6 1 23 396 418 396 418 0.92 9 10 4.7e-05 0.0041 18.3 2.8 1 23 424 446 424 446 0.98 10 10 2.7e-05 0.0023 19.1 1.3 1 23 452 475 452 475 0.92
Sequence Information
- Coding Sequence
- ATGGAGACTATTTTAAGTGATTCTTACTGTCGTCTTTGCGCCGATTTGAAACCAGTCAGCGTCCTCACCAATATGGTGATGAACACAGAGATATGCCGAGAATTCACAAACAAGTTGACGCGGTTGGATTTACAAGTGAATTTCAATACGAAGTTGCCTAAAACAGTTTGTTCTGAATGTATTAACTCATTGGAACGCGCGTACGATTTTGTTAAATCTGTAGAGCTTGCACAGGAAGCGTTTAAAGACTACGACAGCTCTGTCTTCGATGATATGAAAGTTGAGGTTCCAGACGACGATTCTATGGACAAAGGTATCAACGATGAGTCCAGTTTCAAAGCGGAAAATTCTATATTTGATGAAAGTGTGATTGGTCAAGAGTTACTTGTAGAATATGTGCccaaaaataaagcaaaaaaaattaattcgaaACCCAAACCTCAAAAGAGAGCAGTTGAGTCAAATAGTACTACATTAAGTGAACCTACGACCAGTAAACCAAGAAAGAGACCTAAAATCTCAGCTAATGTAGAGTTGGACACTTGGCAGGATTGTAACTGGTTGTGTGCTGTGTGCGATAAATGTTTCTCGTCTCCTAGTGAGCTGAGAGTACATTCTATGCAGTTTCATTACACGTGCAATGCGTACAGGTGCTTTGACTGCAGAGAGCGAGGGCTGCATATGGATAACTTTGTAACCCATATTTCAAGACACCGACCAGTCCTAACACTAATGTGTTACAAATGCTCGCAAAAATTCGATACTGTAAAAGAATTGAAGGCACATAAAGAAACACATTTCGATACTGAATACATTTGCCATGGATGCAACTTAACTTTCCCAAATAAAGAGGAATTAGATGATCATATGAATAGATTTTATAAGAATGTAAAAACTAACTCGTTGGAGGTTACAGAAAATACCAGTTTGACTTGTGTTATATGTGaaaaaacttcaaaatctaAACTAACTCTGGTCCAACACCTGATATTACATACGGATAGAAAACGAACGCATGTTTGCGATATTTGTGGTAAGAGCTTCTACCACAAAAATGATTTAATTGAGCACCGAAAATTACATGATGACGCAAGACCATACAAATGTGAGATCTGCCAATACACTTTTAAGACTGAGCCTAATTTGAGAAAGCATGCAATTACTATACATTTCAGACCAAAACAGTTTGCATGCAAAGATTGTGGGAAATGTTTCCGATTAGGTAAAGAATTGGTTGTCCACAGTGCAGTCCATAGTGACGTAAAGCCTTATAAGTGTACGTTCTGTGAAAAAGGGTTTCGTTTAAGACACTCACTCCAGAAACATATAGCCATCCACACTGGAATAAAGCCATATGCATGTGGACACTGCCCGCTGACATTTAATAACTGGTCTAATTTCAACAAACACTCAAAAGATGTGCACGGTGTGGACAATGCCAAAAGGAAACGTACACCCAACGATCTTTACGCTGTAGATCCGGAGACAAAAAAGATTATATATCCTGACGAAGAGAAAGTAAATGAATTTAAGAACCAAATATTGGCAGATACGGGGAAAGGAAGACCGAGAAAAAAATGGTGA
- Protein Sequence
- METILSDSYCRLCADLKPVSVLTNMVMNTEICREFTNKLTRLDLQVNFNTKLPKTVCSECINSLERAYDFVKSVELAQEAFKDYDSSVFDDMKVEVPDDDSMDKGINDESSFKAENSIFDESVIGQELLVEYVPKNKAKKINSKPKPQKRAVESNSTTLSEPTTSKPRKRPKISANVELDTWQDCNWLCAVCDKCFSSPSELRVHSMQFHYTCNAYRCFDCRERGLHMDNFVTHISRHRPVLTLMCYKCSQKFDTVKELKAHKETHFDTEYICHGCNLTFPNKEELDDHMNRFYKNVKTNSLEVTENTSLTCVICEKTSKSKLTLVQHLILHTDRKRTHVCDICGKSFYHKNDLIEHRKLHDDARPYKCEICQYTFKTEPNLRKHAITIHFRPKQFACKDCGKCFRLGKELVVHSAVHSDVKPYKCTFCEKGFRLRHSLQKHIAIHTGIKPYACGHCPLTFNNWSNFNKHSKDVHGVDNAKRKRTPNDLYAVDPETKKIIYPDEEKVNEFKNQILADTGKGRPRKKW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -