Mlor024372.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- Zfa
- Assembly
- GCA_029852875.1
- Location
- CM056803.1:13200085-13214430[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0033 0.29 12.5 1.6 1 23 258 280 258 280 0.99 2 11 0.00021 0.019 16.3 0.6 1 23 287 309 287 309 0.98 3 11 1.4 1.2e+02 4.3 1.3 1 9 313 321 313 336 0.78 4 11 6.7e-06 0.00059 21.0 1.0 3 23 343 364 341 364 0.95 5 11 0.00016 0.014 16.6 0.4 2 23 371 393 370 393 0.95 6 11 1.7e-06 0.00015 22.9 0.7 1 23 406 428 406 428 0.96 7 11 1.4e-06 0.00012 23.2 0.4 1 22 434 455 434 459 0.94 8 11 0.00028 0.025 15.9 1.2 2 23 468 490 467 490 0.95 9 11 1.2e-05 0.0011 20.2 1.5 1 23 497 520 497 520 0.98 10 11 2.1e-05 0.0018 19.5 0.2 1 23 529 551 529 551 0.98 11 11 0.016 1.4 10.3 0.2 1 19 557 575 557 580 0.87
Sequence Information
- Coding Sequence
- ATGGAAGAAAGAACAATTCATAACCACAGAAATGTGGACGTAAAAGTCGATTCGGAAAAGAAGTTCTGTTTTGGTTGTTTATGTGTAAATGATGAGAAAAATGTTCAAAACTATGCATTTGAATGCGGTCCCCTCAAGAGTATATTCCAGATGGACTGCATATCCCTGTGTTACCTGTGCAAAAGGATGGCCCAGCATACTGAACAGTTTATAGAAAATGTGCAGAGTAACCAAATATTGTTGGAAAACTTCCAGAATATCATGGATGACACATTAAAATCTGTGCGCTCACAGACACAACCACTAGTCAATCTAACACAAGTGCCATTTGATGTGATAGAGTTGTCAGAGAGAGATAGCAATAGTACTGAGGAGAGCTTCTCTGTCATATGCTCTCGTAGTATAAAGAAAGCTGTCCAGATCAAGATGGAGATGAAAGAAGAGGAGTATTCGGATCATCTTGAAGGAGAATTCATTAATGGTGGTGATGACTTCTCTGAACCATACGTGAAAGACGAAGACGACACGTTTCCCCTGAAAACCTTGCTGAAGGAAGAATTAGGCCTGCAAGACTTAGACAGCCTAGACCTTATGAGTCTCAGTGCTTCACTAAAGAAGAATAAACACAAGAAGAAAAGTAAAATCAAACAGGAAGACTTGCAACAGATACAGAGCGacatacctaaaataaaaactatatacataACTCGGGAACAATGTATGGAAGAACGCGCGCGCATGGAGCAGGATCACAAATACTTGAACTTCGCCTACAAGTGTGAAAACTGTATCAAAGGATTCTCCTTCAAAGGCAGCTATGATAAGCATATGGAGAAACATAATCAGTGCATGGGAGATTATGAATGTGATATTTGCAAACAGAGAACGGATACTGAAGATAAATTAGTTAGCCATATGAGATATCATTTAATTCGCTACAAATGTCCTGAATGTGGTTTAACAAGAAACTGTCGGATGACGATTCGAGATCATTACAACGCGTACCACAGTCAAGGATTCCAAATATGTCTGTATTGCAGCAAGAGTTTTAAACGTCAAATATCACTGCGCAATCACATACGCTACGTACACATGCGGAAGGGCCGCGTACAGTGCGCGTATTGCCAGAGAACATACGCTGACAAAAGCGTACTGCGCACACATATGACCATTAAACATTCCAAAGAAGTGTCAGCGCTGCCCAGCAACAAGCAACACGTGTGCCCGGAGTGTGGCATGGCGTTCAAGTCACCTTCTCAACTGAGGAACCACAGCAGCAAGCACTCCGAGATACGAGACTACTATTGTGTGGAGTGTGACAAgAGCTTCAAAACTAGTGCCACATTAAAAAACCATTTGAAGACTGCAGCTATCCACGTCAGTTATTTACAATTACCATTACCGTGTCTTCACTGTGACAAGCGTTTCGCGATACGTCGAGATTTGGAGAGACACACAAACAGAATACACCTCAATATCAAACCTACTTTTACTTGTGATAGATGTGATAAGAATTACGTGAACAACCGGTCGTTAAAGGAACACCAGCGGCGAGCCCACGACGGGTATAAGAGACCCCTGCAGTTCCCATGCCCTATGTGTGATAAGGTTTTTGACCGCAACCAAATCCTGAAAGGTCACATCCGCACGCACACGGGAGAGCGTCCGTACCAGTGCAGCAAGTGTCCCGCCTCCTTCAGCCAGGCCAACATACTGCGCACGCACGACAGGCTCATACACCTCAAGCTCACCAGGGATGGACGGCCGAAGCTCAAATAA
- Protein Sequence
- MEERTIHNHRNVDVKVDSEKKFCFGCLCVNDEKNVQNYAFECGPLKSIFQMDCISLCYLCKRMAQHTEQFIENVQSNQILLENFQNIMDDTLKSVRSQTQPLVNLTQVPFDVIELSERDSNSTEESFSVICSRSIKKAVQIKMEMKEEEYSDHLEGEFINGGDDFSEPYVKDEDDTFPLKTLLKEELGLQDLDSLDLMSLSASLKKNKHKKKSKIKQEDLQQIQSDIPKIKTIYITREQCMEERARMEQDHKYLNFAYKCENCIKGFSFKGSYDKHMEKHNQCMGDYECDICKQRTDTEDKLVSHMRYHLIRYKCPECGLTRNCRMTIRDHYNAYHSQGFQICLYCSKSFKRQISLRNHIRYVHMRKGRVQCAYCQRTYADKSVLRTHMTIKHSKEVSALPSNKQHVCPECGMAFKSPSQLRNHSSKHSEIRDYYCVECDKSFKTSATLKNHLKTAAIHVSYLQLPLPCLHCDKRFAIRRDLERHTNRIHLNIKPTFTCDRCDKNYVNNRSLKEHQRRAHDGYKRPLQFPCPMCDKVFDRNQILKGHIRTHTGERPYQCSKCPASFSQANILRTHDRLIHLKLTRDGRPKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026606;
- 90% Identity
- iTF_01029498;
- 80% Identity
- -