Mlor017686.2
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056795.1:3998577-4001503[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-07 0.00046 20.7 0.2 1 43 15 57 15 59 0.93 2 2 2.8 1.5e+03 -0.2 0.0 18 28 209 219 208 219 0.91
Sequence Information
- Coding Sequence
- ATGGCACCGCGATACAAATGCAGAGATATTCGTGGAAAATGGACCGAAGAAAATATGCAGAAAGCATTAGCAGAAGTAAAGCGCGGTAGAATGAAAATTTATACTGCTTCGAAACACGTTAATATACCGAGACGTACACTCAAAAGATATTTAGCTGAGAATAAGTCAAAAAAGGCATCCCTGGGAAGAAAACCATTGCTCAGTCTAGAGCAAGAAAAGGATCTTGAATCTAGGATCATCCGTTTGTGCACTGTGGGCCCAGAACGTATTTTCAACATAGATGAAAAAGGCTGTCAACTCAATCTTCACAAAGCACCACAAGTATTGGCCGAACGAGGGACTAAGAGGGTGCATATTGTAGGCCACGAACATGCTGAAGATGTGACAGTGGTATCATGTGGCAATGCTTTGGGGCAGGCTGTTCCACCATTGATTCTGTTCAAAGGTAAAAGGTCAAAACCGGAATGGAAAGACTCGTTACCAAACGGAACGGATGTTCAAATGACTCCCAAAGGGAGTATGAATGTTGAAGCTTTTGTCAAATGGATACACCATTTGGCTAAGTACAAACTTCCTGCACCTTGTTTGGTGGTGTTAGATGGGGCTAAATGCCACTTAGATTATTCAATCGTAGAAGCTGCTGACAAATTTGACATAAAGCTTTTGTGTTTGCCGAGCAACACTACCCACGAACTTCAACCTATGGACAAATCAGTCTTTAGGTCTTTTGAGTACTTCTGGGATGAGGAAGTTTTGAAATATTGGGCCCATCACGAAGACCGAAGAATAACTAAGCAAAGATTCAGGGTCATTTTCTCAAAGGTATGGGACAAAGCTATGACTCCAGCGAACATTAAAGCAGGGTTCGAAGCGACTGGAATATATCCATTTGACCCGACCAAAATTCCAGAAGAATCATACGCACCAAGCGTGCCTACACATGTAGAAGCTCCTGACGTATTAGCAAACGAATCAACGGAAGATTTCAGTTCCAGTGACGATGACATACCACTCGCTGCACttatttcttcaaaaaataaagcCTCTGCCTCTTCACCATGTGCCACAAATAAATCTAAAGATAAAGCTCCAGTCTCTTCAACTAATAAAGTCATAACTGTAAAAGTACATACAACTCCATGTTTTTCTAAGAATACAACTAATGAGGATCCAGACCCAGTTTCGGTGCCAGTCCCATCTATTTCTCCCTCAATTCTGCTTACATCGGATGAGACACATGCTGAAGGTTTACTTTCTCAACCGCCCCTTCAAAGGATAGATAAGATGCCTGAAAGTCTCAATGTTTCAGCAGCAGGACTATCTATCAGCGACAACAATTTTATCGAGCATTCAAACGTGACTTATGATATAACTGCAGCTTTTAAGGATATTTCTGCGGACTCTTCTAAGGTCATGACTGCTGAAGTACAAATTTTAAATCCATATGCATCTAGGGAAACAACTAATAAGGATCCAGAACCAGgccaagtacttaGTGCCACTGATAAAGAGAATTATATTTGCATCCGATGCGAAGATTAG
- Protein Sequence
- MAPRYKCRDIRGKWTEENMQKALAEVKRGRMKIYTASKHVNIPRRTLKRYLAENKSKKASLGRKPLLSLEQEKDLESRIIRLCTVGPERIFNIDEKGCQLNLHKAPQVLAERGTKRVHIVGHEHAEDVTVVSCGNALGQAVPPLILFKGKRSKPEWKDSLPNGTDVQMTPKGSMNVEAFVKWIHHLAKYKLPAPCLVVLDGAKCHLDYSIVEAADKFDIKLLCLPSNTTHELQPMDKSVFRSFEYFWDEEVLKYWAHHEDRRITKQRFRVIFSKVWDKAMTPANIKAGFEATGIYPFDPTKIPEESYAPSVPTHVEAPDVLANESTEDFSSSDDDIPLAALISSKNKASASSPCATNKSKDKAPVSSTNKVITVKVHTTPCFSKNTTNEDPDPVSVPVPSISPSILLTSDETHAEGLLSQPPLQRIDKMPESLNVSAAGLSISDNNFIEHSNVTYDITAAFKDISADSSKVMTAEVQILNPYASRETTNKDPEPGQVLSATDKENYICIRCED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -