Mlor012148.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056789.1:1643379-1645673[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-09 5.3e-06 26.9 0.0 1 42 18 59 18 62 0.89 2 2 2.5 1.4e+03 -0.0 0.1 15 22 134 141 132 151 0.60
Sequence Information
- Coding Sequence
- atgcCTCGCAAATATATTAGAAAGGTTGGAGTTAGTCCACGTGCTGAATGGACGCAAGAGGCATTAATAGCTGCAATGGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGGTATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGgaaaacaCCCACTTCTTGATTTTGCAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTGATAAGGAGACTCGAAAGGCTGGGCCACATTGGTTAAGATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGGGCACAGGGATTTAATCGAGATGAAGTTAACAAAATGTTtgaactactacttaaagtaATGACAGAGCACGACTTACTGGATAAACCGGATAGGATTTACAATGTAGATGAGACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATTGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGGTGAAACTTTATCTGTAATAGCATGCTGCAATGCTGTAGGGAACTTTCTTCCCCCAGTAATCATCATCAAAGGTGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCTGGATCAGAAGTCTATATGAATAGAAAATCCGCAAGAAAGTATTACAAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGCCAAATGtattaagaaaagaaaaggcATTAGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCGACCAGGCGAGAGCAGGTGAAATTGatctgcataaaaaaaaacagagatcTCAAGCTAAGATTCAGAGTAAAATTCCAGCAAAAACTAATAAGAAAAGAAGAATAGAATACAAGGACTCGAGTGATGAAATGTCGATCTCAAATAATTCGGATGAATCTGAGTCAGAGGCATACAAGGATTCGGAATGCAAAGAATGCTTTGAAGAATATAAAAAGACCAAATCAACTGCAGATTGGATACAATGTGTAATGTGTAAAAAATGGCTACATGAGGATTGTACCATGTACGGCGACTATTGCAATAAATGTGGTAGGATTAAACGAATgaatacgaaaaaaataccGTAG
- Protein Sequence
- MPRKYIRKVGVSPRAEWTQEALIAAMDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFANEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFDKETRKAGPHWLRSFLERNKELSIRQAEGLSVARAQGFNRDEVNKMFELLLKVMTEHDLLDKPDRIYNVDETGVQLNNSTGKVIATRGARVVHSITSGEKGETLSVIACCNAVGNFLPPVIIIKGVNKKPEFQDGLPPGSEVYMNRKSARKYYKLQSSFQRRFQPNVLRKEKALESSDEMTISDISNESDSDIDQARAGEIDLHKKKQRSQAKIQSKIPAKTNKKRRIEYKDSSDEMSISNNSDESESEAYKDSECKECFEEYKKTKSTADWIQCVMCKKWLHEDCTMYGDYCNKCGRIKRMNTKKIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -