Mlor008093.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056784.1:18813476-18815956[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.16 86 3.8 0.0 1 16 3 18 3 20 0.92 2 2 2.1e-11 1.1e-08 35.4 0.1 1 41 33 73 33 76 0.93
Sequence Information
- Coding Sequence
- ATGTGGACTGAAGAAAATTTACGATCTGCTATGACTGCGGTAAGAAATGGAGGTTATATTCGATCACGTTTGAGGAAAACAACAGGTCCTAAGTGGTCTGAAGAAAACCTACGAGCTGCTATGACAGCTGTTACTGAGGGGCAATTGAACTTGAAAGCTGCAGCCAGAAGGTACGGCATACCAAGAACATCTCTTCGTAATCATTTGAGATCAGGAAGCTTCGTCAAAGGACGAGGACAAAAACCAGTATTCGGCAAAGTCCAAGAAAAACAACTCGtggaaagaataaaaaatctttcaaataaaGGCATTTCTTTAACTTCGAAATTCATTCGCAAACAGGCCTTTGAGTTTTGTATAGAAAACAATATGAAACATAAATTTGACATCACCACGGGTCTTGCAGGCCCCTGCTGGTATCAAGGGTTTGTAAAACGGAATCCAGAGATAAATCCTGTTAAACAATTAATCGGACATCAAACAGATTCTATGTGA
- Protein Sequence
- MWTEENLRSAMTAVRNGGYIRSRLRKTTGPKWSEENLRAAMTAVTEGQLNLKAAARRYGIPRTSLRNHLRSGSFVKGRGQKPVFGKVQEKQLVERIKNLSNKGISLTSKFIRKQAFEFCIENNMKHKFDITTGLAGPCWYQGFVKRNPEINPVKQLIGHQTDSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -