Mlal024504.1
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- -
- Assembly
- GCA_949319445.1
- Location
- OX439366.1:11180540-11192444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00018 0.017 16.5 1.2 1 23 265 287 265 287 0.98 2 13 0.083 8.1 8.1 4.5 1 23 295 318 295 318 0.93 3 13 0.89 87 4.9 0.4 1 23 322 345 322 345 0.90 4 13 0.0067 0.65 11.5 2.3 1 23 420 442 420 442 0.99 5 13 0.00012 0.012 17.0 2.7 2 23 451 473 450 473 0.96 6 13 2.2 2.1e+02 3.7 6.7 1 23 477 499 477 499 0.98 7 13 0.0012 0.11 13.9 2.1 1 23 504 527 504 527 0.98 8 13 1.5 1.5e+02 4.2 3.9 3 23 533 554 531 554 0.86 9 13 0.7 68 5.2 0.3 1 20 573 592 573 594 0.93 10 13 0.054 5.3 8.7 0.2 2 23 640 662 639 662 0.94 11 13 2.9e-06 0.00028 22.1 0.9 1 23 671 693 671 693 0.98 12 13 0.0016 0.16 13.5 0.8 3 23 701 721 699 721 0.96 13 13 5.5e-06 0.00054 21.3 2.6 1 23 727 750 727 750 0.98
Sequence Information
- Coding Sequence
- ATGTATAATCTCAAGGCATGTATGGTGTGTTTCAGCACAAATGTAAAGTTATTTAGCATGAACAGTGCAAAATTACGACAGGAATTCCATTTGATTTCTGGTATCCAGACTTCCCACGAGGATGGTCTGCCAGATTATTTGTGTTTTCAGTGTTCAGCTGTTGTGCGAAACTTCAAAAAATTTCGCGATAGATGCCACCGAGCTCATTACGCTTTGAAAGAAATTTTTAGCAGAAACAAAGagATTACTCAAACAAATCTTGAATACTTAGACCGCAATCTCCTTGGTATCATGCCGCCTCTATCGTTCATGAGTTTAGATAAAAATCACTATGAGAAAGTATCATTTCAGTGGAAAAAACCAAACCGTATTGATTGTAATTCTTCCAATCGAAACATACCTGTATTTCACTGTAGTACACTAACTTCCGATTTCACTTTTGATGGTGTAACCAATACCAGTGATTTAGAATTCACTGAAGAGAAaattaaaagagatgtagatGAAACGGAACCTGTAGAACTACCCGTTGAGTTTGAAGTATCCAAAGATGAGTCTGCTGGCTTTGCGTGTAGTACAACAGAAGACACAGAAATACCAGATTCATTTTTGGATAACGAAAACTTCAATAGTGATCAGGATGTTGATAAATTCCCTGACTTGGCACTTAACGTTGAGAATACGGTCATAGATGGGACAGAAATGGATGAAGAATATGCTACATTGGTCCCAATTTCTGTGAAAGAAGCTAAAGCAGCGATCGAGGTGTACAAAATGTTCACTCAGGGTAAATACCATTGTGAGATATGCAATAAAGCTTATAATAATGCTGAAAGGATGAAGATACATTTACGTATGCATGATAAGcaTGTAAGTGGGAACTACCACTGTAGTCTCTGCCAGTACTACTACAAAACAGAGTTCCTACTGAAGACACATATGACTGATAAACATCTGTTCAAGTATTTATGTAGAAAATGCCCCGAAGTTAGTTTTGATAGATCATCGGCAAAACAGCACTACATCTGGACTCACTTACAAAACGGCAGCAAAAAGAATGCAAACTGGTACGAATCTAGACCAAAATGGATGCAGACTCGAGGAGGGAAACGCGTCAAGGGAGCTGTCACTATAAAACCGGTTAAGAAGAACAGGAAGCTGCCGGAAGACTTTCTTATCTACTCTCCTATTGGTCACGAGGAGCAGTACCGAATGATCCAGGAGAGACAGCAGTCGCGGAACTATCAAGAAGCCAGGTATCAGTGCGATTTGTGCTACCGAGGGTTCAGAGGTATGCTGACGTATACTAAGCATATGAAGAAACACGATCCTGCACAGTCAGGTCCCTTGCAATGTGACATCTGCAAGATCCACTTCAAAGACCAGAGGAAGCTCTACAAACATATGAATATCACTCACTTGTTCAAATACTCCTGCCAGCTGTGTAGTTACGTGTGCTGCAAtagaGGCCAAGCTCACATGCATTATAGATGGCATAAGAACGTCACGTATGAATGTCCACACTGTAAGAGAGAGTTCATGAAAGCATCAACGCGTCTAACTCACATAAGAATAAAACATCCGTCCATGTGTCTGTGCACTATTTGCGGACACAGTTTTGTGAGCGATTCAGGACTATATTGTCACAAACAAATAGCTCACACTGAAGAGGAGATAGAACAGAGCAATAAGATGGTGGTGGACACGTCCGACCCGCACTACTGCGCCGACTGCCAGATACAGTTCATGTCGTTCGCGGCCTTCACGACGCACCTCGGCAGCTCCTACAAACATGCTACGACTAATCTGTCAATAAAGCCGTCGCGGCGCAGCAAGGCGGAGGAGCCGCGCGCCCGCGGCCGGCCCCGGCGCGGCGCCTGCTCCGAGATCGTCAACAACGGCCTCACCACCTCCAGCACCTGCGAAGTGTGCGGCAAGTTCCTATCAAACGACGTGCAGGCGCGCAAGCACTACGAGTCGGAGCACCCCGACACCGAGTACCTGAAGCGCTACATGTGCGACGTCTGCGGACACACCACCAGGCAATACGCGAACCTGATCGTGCACATGCGCACGCACACGAACGAGAAGCCGTACGGATGTCCGCACTGCGACCGGCGGTTCAACATGCCCAGCAACAGAGACAGGCATCTTGTCGTGCACACGGGTGAGAAGCGATATCAATGCCAGCACTGTAACCGTCGCTTCACGCAGAGCAGCGCCGTCAAGCTTCACATACAGACCGTCCACCTCAAGATACCCTACGCGCCCTGGAATAAGAAGAACAGGAAGCGACGCAAGGAGTTAGAAACAGCGGGCATGTCgacgccgctgctgctgccgcCTCCCAACAAGCTCGCCGCCTTCGACGCACCCGCTGACTATCTCAACGCCTACATCACCTATAACGACGACTaa
- Protein Sequence
- MYNLKACMVCFSTNVKLFSMNSAKLRQEFHLISGIQTSHEDGLPDYLCFQCSAVVRNFKKFRDRCHRAHYALKEIFSRNKEITQTNLEYLDRNLLGIMPPLSFMSLDKNHYEKVSFQWKKPNRIDCNSSNRNIPVFHCSTLTSDFTFDGVTNTSDLEFTEEKIKRDVDETEPVELPVEFEVSKDESAGFACSTTEDTEIPDSFLDNENFNSDQDVDKFPDLALNVENTVIDGTEMDEEYATLVPISVKEAKAAIEVYKMFTQGKYHCEICNKAYNNAERMKIHLRMHDKHVSGNYHCSLCQYYYKTEFLLKTHMTDKHLFKYLCRKCPEVSFDRSSAKQHYIWTHLQNGSKKNANWYESRPKWMQTRGGKRVKGAVTIKPVKKNRKLPEDFLIYSPIGHEEQYRMIQERQQSRNYQEARYQCDLCYRGFRGMLTYTKHMKKHDPAQSGPLQCDICKIHFKDQRKLYKHMNITHLFKYSCQLCSYVCCNRGQAHMHYRWHKNVTYECPHCKREFMKASTRLTHIRIKHPSMCLCTICGHSFVSDSGLYCHKQIAHTEEEIEQSNKMVVDTSDPHYCADCQIQFMSFAAFTTHLGSSYKHATTNLSIKPSRRSKAEEPRARGRPRRGACSEIVNNGLTTSSTCEVCGKFLSNDVQARKHYESEHPDTEYLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELETAGMSTPLLLPPPNKLAAFDAPADYLNAYITYNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301697;
- 90% Identity
- iTF_00851141;
- 80% Identity
- -