Mlal029108.1
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- -
- Assembly
- GCA_949319445.1
- Location
- OX439370.1:1683330-1692278[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.3 6.2e+02 2.2 0.0 5 20 107 122 106 124 0.89 2 12 0.00025 0.025 16.0 0.4 1 23 132 155 132 155 0.96 3 12 2.9 2.8e+02 3.3 0.9 1 23 160 183 160 183 0.81 4 12 0.00038 0.037 15.5 0.6 2 23 196 217 196 217 0.97 5 12 0.00038 0.037 15.5 1.0 1 23 224 246 224 246 0.98 6 12 0.24 23 6.7 1.6 2 23 252 272 252 272 0.96 7 12 2.4e-05 0.0024 19.2 1.3 2 23 278 299 277 299 0.97 8 12 0.019 1.9 10.1 0.5 2 23 304 324 303 324 0.96 9 12 6.7e-05 0.0065 17.8 3.3 1 23 367 389 367 389 0.98 10 12 0.00049 0.048 15.1 0.9 2 23 395 416 394 416 0.96 11 12 0.027 2.7 9.6 0.5 1 23 422 445 422 445 0.95 12 12 0.053 5.2 8.7 1.1 2 23 451 473 451 473 0.96
Sequence Information
- Coding Sequence
- ATGCCAGcTCCAGAAACAGCAGCGCGTGAGGAAGTACCACCTGCTTCTCAAAGTACTGCAGACATAGACAACTCAGATTCTCAGAATATATCAAAAACTCATCAGGTCAAGAAGATTGTTCAGAAAACTTTAGGATTCGAAGACATGGACAGTTTCAAAttgaagtttaaaaatattctgCACAACACGAAGTTTTGTGGAATATGCATGGAAAGTAACGAAAGTATGAACTCCGTCGAAGATGATCTAGAGATTGTTGTATATGAACGAACTTATGCGAAGCCTTTGCAGGGTCTAATCGATGAAGTGTTTAAAGAGTTTTGTGACTCGGAATTCAGTAATATTGACAAATATGAAAGACATGTGGAATCCTGTGAAGATATAAAAAGGGACTTTGCTTGTGAGAACTGTCCAGCCTCGTTTGATACTTCTGGTCGTTTGACGAACCATTTGAAACGAAGACATGGCGCAGATATCTTCCCTTGTGGCCTTTGCAGTAAACACTTCCTGAAAGATTCTGAAAGAAGAGAGCATATCGTTAAAGTTCACGGCGACCTTGACACTACAAAGAGGGTAAAAACTGAGCGATGTCTTGTGTGCCAAGCAATGTTTGATAATAAAAGAGAGCTGGTGCAACATATGAAATCTCATAACGGTCCTAACGTAACATATCCATGTACGATCTGCAACACAGAGTATTCCACCGTGAGACAGTTCCAAGCACATAACCGCAAACACAAAGGGCCATTTGCAACATGCCATGTTTGTGGTAAACAAATGAGAGAGATTTTGCTGGAAAAACATTTAACTACGCACTCGACTGCAATACAAACATGTGAAACATGTGGgaggtcttttaaaaatatcactTTACTAAAATATCATCAGAAAGTTCATTTAGAAAGTGTCCCATGCCCTAAGTGTAAGAAAATGATGAACCCTGCGAAACTACGCAGACATTGGAAAAGACATGTCATGGAAGATTGTCCTGAGAAAAAACAACAGCCTAAATCGAAATGCAAACTGTGTGAATATACGACCTGGAACAGTACACTACTAGAATGTCATATGAACCGACaccacttaaaaataaagccGTACATCTGTCATATATGCAGCAAAGACTTCATCGGTAAACATTTGCTGAGAAAACATCTTGAAACACACGACGAGAAAAGCGTTGTCTGCATGATATGTCTGAAGAGCTTTGCCAATGCTACTTGTTTGAAATTGCATCTGCGGCTACACACTGGAGAAAAGCCATTCACTTGTGAAATTTGTGGGGACCGGTTTCGAACAATAAGCATACTGAATGTACATAAGTTAAAGAAGCATTCAGACAAGAGTAACGTTTGTCCGTTATGTTCAAGTAAATTTCATACAGTCAGAGATGTGAGGAGACATATGATACGAGTGCATTGGAAGCAAAAAGATAAGAGTTTTGACCCTCGAGAGTTGAAAGGATTGGATGAAAAACACTATCATTTGTTTCATGATGGTAGAAGAGTTAAAATTGGTGATGAAGATATTGAATTTTATATGcctaatacaaataataatttacgaTGA
- Protein Sequence
- MPAPETAAREEVPPASQSTADIDNSDSQNISKTHQVKKIVQKTLGFEDMDSFKLKFKNILHNTKFCGICMESNESMNSVEDDLEIVVYERTYAKPLQGLIDEVFKEFCDSEFSNIDKYERHVESCEDIKRDFACENCPASFDTSGRLTNHLKRRHGADIFPCGLCSKHFLKDSERREHIVKVHGDLDTTKRVKTERCLVCQAMFDNKRELVQHMKSHNGPNVTYPCTICNTEYSTVRQFQAHNRKHKGPFATCHVCGKQMREILLEKHLTTHSTAIQTCETCGRSFKNITLLKYHQKVHLESVPCPKCKKMMNPAKLRRHWKRHVMEDCPEKKQQPKSKCKLCEYTTWNSTLLECHMNRHHLKIKPYICHICSKDFIGKHLLRKHLETHDEKSVVCMICLKSFANATCLKLHLRLHTGEKPFTCEICGDRFRTISILNVHKLKKHSDKSNVCPLCSSKFHTVRDVRRHMIRVHWKQKDKSFDPRELKGLDEKHYHLFHDGRRVKIGDEDIEFYMPNTNNNLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -