Mlal032016.1
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- -
- Assembly
- GCA_949319445.1
- Location
- OX439374.1:11026573-11052978[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00028 0.027 15.9 3.1 1 23 195 217 195 217 0.99 2 13 2.8 2.7e+02 3.3 0.2 3 20 226 243 225 247 0.87 3 13 0.97 95 4.8 4.1 1 23 251 273 251 273 0.96 4 13 0.018 1.7 10.2 2.3 1 23 278 301 278 301 0.95 5 13 0.02 1.9 10.1 0.5 1 23 305 328 305 328 0.96 6 13 0.023 2.2 9.9 1.5 1 19 339 357 339 359 0.98 7 13 0.0006 0.059 14.8 0.8 2 23 372 393 371 393 0.96 8 13 7.8e-05 0.0076 17.6 1.0 2 23 398 420 397 420 0.97 9 13 0.22 22 6.8 0.7 2 23 440 460 439 460 0.75 10 13 2e-05 0.002 19.5 0.3 2 23 480 501 479 501 0.97 11 13 0.00059 0.058 14.9 1.2 1 23 507 529 507 529 0.97 12 13 6.3e-05 0.0062 17.9 1.9 1 23 535 557 535 557 0.94 13 13 1.6e-06 0.00016 22.9 2.7 1 23 563 586 563 586 0.98
Sequence Information
- Coding Sequence
- ATGATTACTATTTGCCAGGTGTCTCCGGCTGATAACTACCCACAGTACCTGTGTAGCTACTGCTGCGCGCTACTACTCAAGTGTGAGACCTTCCGGCAGAGGTGTCGCCGCGCCCACGAGCTCATGAAGTTCGCCGAAATGAAGAGCCGACTTctgACGACCTCTCAGATCCACTCGATAGCGGTGTCGCACCGCACGGCCCTCCCCCTCTCCGTGTCCCCTCCCGAGGCCACCACCATCGCGGACCTGCACGTCAAGACCGAGGATACCGTCGCTGACATCATCTTCTTTAAGGAGGAGATTGACTTCAGTGACGAGGAACCGCTGGCTAACAAGGTGAAGAAGAAGGATCAAGACAGTGAGCTCGTGGTGGAGCTTCCCCCCTTGCAGAAGGAGGATGAAGGTGAGCTGAACGAGTTTGATGACGACGCGATGGACTATGACGCTAGTGCGAATAACGCCGGATGCGAGGCTGAGTTCGACCTGCCCAGCAACGATATCGAGgtgaTATGTTTAACAGTGGAAGAGCAATTAAACGAGGTTCTGGAGCGCAAGAATTCGTACAACTTCATAAACTCGTTCTACAAGTGCGAACATTGCTACAAAGGTTTCATTCAGGACGGAACTTACAAGAACCACATGTTGCGACATGATCCGTCCCACGGCAAAGAAATCTGTCAGATATGCAAGACTCGGTGGCCGAGCCGTCGCTCTCTGAAGTCCCACAGCGCCGCGGCCCACGAGAGGAAGTACATCTGCAAGCTCTGCAACCACTCTTCGAAGAGCAGCCACCGAGCTAAGGAGCACCTGCAGTGGCACAAAGGGCACAAGTTCACGTGCAAGGTCTGCGGGGCTATGTTCTCCAAGTCCACCAGCCATCTGACTCACCTCCGCCTGCAACATCCGACGAGGTTCTGCTGTGAGGTCTGCGGAGAGAGCTTTTTGGGTGAAATCGGATTGAATATGCATATGAAGAAAACGCATAGAGGATGTGCGAAAGTAAAGAAACCTCGTTTTAAATGTGTCGTCTGCGAACAGTACTTCAAAACTATAGACGCCTTGAAACGACATTGTAATAGTTATGAAAATGGTGTCTGCGATGGAACTCTATGCTCCTGTTTCCAGTGCGGGGAGAATGTCCCCACGCAGGACGCTCTACGAGATCACCTGAAGACCCACGACGCTGGGGTCAAGTGTGAAGAGTGCTCGCGTAGCTTCGCCCACGAGCGCTCGTTGTCGGCGCACCAGCAGCGCGCGCACCTCGGcctcgcgccgcccgcgcgcgcgccgcgcccgccgcgcccgctCGTGCACTGGGTCTGTGAGATCTGCGGCAAGAAGTGCATCCGCTCGTTGTCGGCGCACCAGCAGCGCGCGCACCTCGGcctcgcgccgcccgcgcgcgcgccgcgcccgccgcgcccgctCGTGCACTGGGTCTGTGAGATCTGCGGCAAGAAGTGCATCTCGAATGCAGCGCTGGTGTATCATCAGCGGACTCACACGGGCGAGAAGCCCTTCCAGTGCATCGAGTGCCCCAAGAAATTCAGCAACTTCCAGAGGCTGCAGATCCACGTTCGCACGCACACTGGCGAGCGCCCGTTCAAGTGCTCCAGCTGCCCAAAGGCGTTCAAGCACAAGGCAGCGTTGAACAGGCACGACCGGGTGCACTCGGGCGCGAAGCCCTACCAGTGCTTGCACTGCGGCAAGACCTTTTCGCAGTCCAACTCCATGAAGCTGCACGTGAGGACCGTCCACCTCAAGCTGCCGGCGCCCTACAGGGCCAGGCGAGGGAACCAAGACCTGGACGTACTGGAGCGGGACGTCAGCTGA
- Protein Sequence
- MITICQVSPADNYPQYLCSYCCALLLKCETFRQRCRRAHELMKFAEMKSRLLTTSQIHSIAVSHRTALPLSVSPPEATTIADLHVKTEDTVADIIFFKEEIDFSDEEPLANKVKKKDQDSELVVELPPLQKEDEGELNEFDDDAMDYDASANNAGCEAEFDLPSNDIEVICLTVEEQLNEVLERKNSYNFINSFYKCEHCYKGFIQDGTYKNHMLRHDPSHGKEICQICKTRWPSRRSLKSHSAAAHERKYICKLCNHSSKSSHRAKEHLQWHKGHKFTCKVCGAMFSKSTSHLTHLRLQHPTRFCCEVCGESFLGEIGLNMHMKKTHRGCAKVKKPRFKCVVCEQYFKTIDALKRHCNSYENGVCDGTLCSCFQCGENVPTQDALRDHLKTHDAGVKCEECSRSFAHERSLSAHQQRAHLGLAPPARAPRPPRPLVHWVCEICGKKCIRSLSAHQQRAHLGLAPPARAPRPPRPLVHWVCEICGKKCISNAALVYHQRTHTGEKPFQCIECPKKFSNFQRLQIHVRTHTGERPFKCSSCPKAFKHKAALNRHDRVHSGAKPYQCLHCGKTFSQSNSMKLHVRTVHLKLPAPYRARRGNQDLDVLERDVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -