Basic Information

Insect: Mythimna lalbum
Gene Symbol: -
Assembly: GCA_949319445.1
Location: OX439374.1:4554032-4564087[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0057 0.56 11.8 1.5 1 23 282 305 282 305 0.97

2 10 0.00059 0.057 14.9 2.0 2 23 313 334 312 334 0.97

3 10 1.3e-05 0.0013 20.1 0.4 2 23 370 392 369 392 0.96

4 10 0.0014 0.14 13.7 0.8 5 23 397 416 396 416 0.96

5 10 3.9e-06 0.00039 21.7 1.8 1 23 422 444 422 444 0.97

6 10 3.1 3e+02 3.2 1.5 2 22 454 474 454 478 0.91

7 10 0.0001 0.01 17.3 4.5 1 23 482 505 482 505 0.93

8 10 0.00022 0.021 16.2 1.5 1 23 511 534 511 534 0.96

9 10 0.0013 0.13 13.8 3.5 1 23 542 564 542 564 0.97

10 10 0.00015 0.015 16.7 0.2 1 23 570 593 570 593 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0057	0.56	11.8	1.5	1	23	282	305	282	305	0.97
2	10	0.00059	0.057	14.9	2.0	2	23	313	334	312	334	0.97
3	10	1.3e-05	0.0013	20.1	0.4	2	23	370	392	369	392	0.96
4	10	0.0014	0.14	13.7	0.8	5	23	397	416	396	416	0.96
5	10	3.9e-06	0.00039	21.7	1.8	1	23	422	444	422	444	0.97
6	10	3.1	3e+02	3.2	1.5	2	22	454	474	454	478	0.91
7	10	0.0001	0.01	17.3	4.5	1	23	482	505	482	505	0.93
8	10	0.00022	0.021	16.2	1.5	1	23	511	534	511	534	0.96
9	10	0.0013	0.13	13.8	3.5	1	23	542	564	542	564	0.97
10	10	0.00015	0.015	16.7	0.2	1	23	570	593	570	593	0.96

Sequence Information

Coding Sequence: ATGGAAGAAACATTAAATATATGCCTAACATGTCTAAGTACGGATCGCTACCTAGTTCCTGTGCATAAACTGACTAAGTTACTTCATGAAATACATTTCGAAGAGCTGAACGAGTGCTATGGTGGAGTGTGTTGGGAATGCTGGTATATCCTGATAAAGTTCTACAGGTTCAAGAATAGAGCGAAGATAGCACTGGAGACCTTATCACAAACTACGGAGCATTTCAGACAACTAAAATCCCTCTCAACATTAACAACCAAAACCAATCTTCTCTATGATTACCAATACACATACACCTTCGATCCTCTTACTAATTGTAACACAATATTGAAAGCTGAACCGGATTCAATCAAGCAAGAAACTATAGACCAAAGTGATAATAATTTAGACAATACTTCAGATTTCGATGACGCAATAGAAAATGTTTATATTGAGACTATAGACACAAAACATACAGGCAGGCTATTGAAAATACAAGACAATATTGTAGATGATAATTCAGATTTGAATgatgaacaaaaaatatatattgatgAAGCATTACAAGATATACACATGGATATGATTGGAACGAAACATAgtgatttgtttaaaaaacaaaaatgttttcgaAATATCAATAAAAGTGAAAACGATGAAGATATTACACAAAATCAAATAGTCTACGTAAAAACTTTCAACAGAAAatctaaaaaacataaattaaaatcggaAAAACCTAAAAAAGACTTAATAAATGCTAAAGAGTTTGAACAGAAGTTTTTGAAAGTGGTGTTAAGTGAAGAGGAGATGCTAAGAGTGAGAGAAGAGAAGAGAAACCATTATAACTTCAAGAAGGTTCCGTATAAGTGTGATACGTGCGTGCTAGGGTTTATGAGGAAGGATACTTATAGCTCGCATATGGAGAAGAAGCATGATGAGAGCATCGGCGACCAAGTCTGCGATGTATGCTCCATTCGCTTCCGTCACAAGTTGGCTCTAGAGAATCATAGAAGGAAGCATTACGTGGTGTATAGATGTAGACTGTGCAAGTATGAGATCCATGAGCTCATGTCTGCCGTGAACCATTGTAGGAGCAAACATGATGGGGATGAGCCTGATAGGATACATTGTACACAGTGTGACGTTGTGTTCAAAACTCCAGACGATTTAGAAGCACACAGACAGACGGATCATAGCCTTTTTTGCAAATGTGGTATCAAATTTAAAGACAAAAATAATCTAAGAGGACATATAAATCGAGCCCATTCCGGCCTCCGCGACTTTATCTGTGATATTTGCAAGAAAACTTTCAAAACGAAGACTCGCCTAGAAACCCACATGGTGACACACAGCGGCCATATTGCCAAGAAACTGGCGTATTGTCAACAGTGTCACGTTCAGTATAAGAATATACAGGTCTATAGGAATCATTTGAAGACCAGCGCTAATCATTCTGAGGGaCACCCATGTTCGGAGTGCAACAAGAAATTCAGATCGAAAGGCTACCTGAGGCAACATTACAATTTCTATCATTTACGCAAGTCGCGGTACAAATGTGAAGTTTGCAATAAGATTTTCATATCAAATTGGCGATTGCGTAATCACAAACAACAGTTCCATGGTTTAAATAGACCTAGGAATCATTCTTGTAACACGTGTGCCAAGAAATTCTTTACATTAGCAACCCTCCGCAGTCACCAGCTCACACATTCAGACCAGCGATCCTTTATGTGCGAagactgtggcgacactttcaAGCAAAGTGCTGCTCTGTACACACACACGAGACTTGTACACAAAGGTGGAGGGGCTAAGAAGAAACGCGACTGTTGA
Protein Sequence: MEETLNICLTCLSTDRYLVPVHKLTKLLHEIHFEELNECYGGVCWECWYILIKFYRFKNRAKIALETLSQTTEHFRQLKSLSTLTTKTNLLYDYQYTYTFDPLTNCNTILKAEPDSIKQETIDQSDNNLDNTSDFDDAIENVYIETIDTKHTGRLLKIQDNIVDDNSDLNDEQKIYIDEALQDIHMDMIGTKHSDLFKKQKCFRNINKSENDEDITQNQIVYVKTFNRKSKKHKLKSEKPKKDLINAKEFEQKFLKVVLSEEEMLRVREEKRNHYNFKKVPYKCDTCVLGFMRKDTYSSHMEKKHDESIGDQVCDVCSIRFRHKLALENHRRKHYVVYRCRLCKYEIHELMSAVNHCRSKHDGDEPDRIHCTQCDVVFKTPDDLEAHRQTDHSLFCKCGIKFKDKNNLRGHINRAHSGLRDFICDICKKTFKTKTRLETHMVTHSGHIAKKLAYCQQCHVQYKNIQVYRNHLKTSANHSEGHPCSECNKKFRSKGYLRQHYNFYHLRKSRYKCEVCNKIFISNWRLRNHKQQFHGLNRPRNHSCNTCAKKFFTLATLRSHQLTHSDQRSFMCEDCGDTFKQSAALYTHTRLVHKGGGAKKKRDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00888621;
90% Identity: -
80% Identity: -