Mlal029759.1
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- Zfa
- Assembly
- GCA_949319445.1
- Location
- OX439371.1:2304513-2315858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.069 6.8 8.4 2.9 1 23 257 279 257 279 0.98 2 11 0.00021 0.021 16.3 0.6 1 23 286 308 286 308 0.98 3 11 2 1.9e+02 3.8 0.9 1 8 312 319 312 335 0.85 4 11 2.8e-06 0.00028 22.2 3.5 2 23 341 363 340 363 0.94 5 11 0.00053 0.052 15.0 0.4 2 23 370 392 369 392 0.94 6 11 1.2e-05 0.0012 20.2 1.3 1 23 405 427 405 427 0.95 7 11 1.4e-06 0.00014 23.1 0.4 1 22 433 454 433 458 0.94 8 11 0.00028 0.028 15.9 1.2 2 23 467 489 466 489 0.95 9 11 0.0012 0.12 13.9 0.9 1 23 496 519 496 519 0.97 10 11 1.6e-05 0.0015 19.8 0.1 1 23 528 550 528 550 0.98 11 11 0.016 1.6 10.3 0.2 1 19 556 574 556 579 0.87
Sequence Information
- Coding Sequence
- ATGGATGAAAGAATAATTCAAAACCACAGGAATGTGGAGGTAAAAGtcaatacagaaaagaaattttgttttggttGTTTGTGTGCAAATGAAGagaaaaatgtacaaaaatatgcATTTGAATGCGGTCCCCTCAAGACTATATTCCAGATGGACTGCATATATCTGTGTTACCTGTGCAAGAGGATGGCTCAACACACTGAACAGTTCATAGAGAATGTCCAGAGTAACCAAATACTATTGGAAAACTTTCAGAATATCATGGATGAGACGTTAAAATCAGTGCGCACACAGACGCAACCACTAGTCAACCTAACACAAGTGCCATTTGATGTGATAGAGTTATCAGAAAGAGATATAAATAGCGCTGAGGAGAGCTTCTCTGTCATATGCTCTCAGAATATGAAGAAGGTTGTCCAGGTCAAAATGGAGATGAAGGAAGAGGATTATTCAGATCATCTTGAAGGAGAGTTCATTAATGGCGGTGATGATTTCCCTGACCCATACGTGAAAGATGAAGATGACGCGTTTCCACTAAAAGCCTTGTTGAAGGAAGAATTAGAACTACAAGACTTAGACAGCCTAGATCTCATGAGTCTCAGCGCGACGCTAAAGAAGAACAAACgcaaaaagaaaagtaaaatcAAACAGGAAGACATGCAGATAAAAAGcgacatacctaaaataaaaactatatacaTAACTCGGGAACAATGTATGGAAGAGCGTGCGCGAATGGTGCAAGATCCTAAATACACGAACTTTGCGCACAAGTGTGTAAACTGTATCAAAGGCTTCTCCTTTAAAGGCAGCTACGATAAGCATATGGAAAAACACAATCAGTGCATGGGCGACTATGAATGCGATATTTGTAAGCAGAGAACGGATACTGAAGATAAATTAGTTAGCCATATGAGATATCATTTAATtCGCTACAAATGTCCTGAATGTGGTTTAATAAGAAACTGTCGGATGACGATTCGAGATCATTACAACGCGTACCATAGCCAAGGATTCCAGACTTGTCCGTATTGCAGCAAGAGTTTTAAACGTCAGACATCACTGCGCAAGCACATACACTACGTACACAAGCGCAAGGGCCGCGTGCAGTGCGCGTACTGCCAGAGGACGTACGCTGACAAGAGCGTACTGCGCATGCACATGACCCTTAAACATTCCACAGAAGTATCAGCGCTTCCCGTCACCAAGCAACACATCTGCCAGGAGTGCGGCATGGCGTTCAAGTCACCTTCTCAGCTGAAGAACCACAGCAGCAAACATTCCGACATACGAGACTACTACTGTGTGGAGTGTGACAAGAGCTTCAAAACTAATGCCACATTGAAAAACCATTTGAAGACTGCAGCGATCCACGTCAGCTATTTACAATTGCCATTACCGTGTCTTCACTGTGACAAGCGTTTCGCGATACGGCGAGATTTAGAGAGACACACCAACAGAATACACCTCAATATCAAACAGTCGTTCAATTGTGATAGATGTGATAAGatgtaTTTGAACAACTGGTCACTAAAGGAACACCAGAGGCGGGCCCACGACGGGTATAAGAGACCCCTGCAATACCCATGCCCAATGTGCGACAAGGTTTTTGATCGCAACCAGATCCTGAAGGGCCACATCCGCACGCACACAGGCGAGCGTCCGTACCAGTGCAGCAAGTGTCCGGCCTCCTTCAGCCAGGCCAACATCCTGCGCACCCACGACAGACTAATACACCTCAAACTCACCAGGGATGGACGGCCTAAGATTAAATAG
- Protein Sequence
- MDERIIQNHRNVEVKVNTEKKFCFGCLCANEEKNVQKYAFECGPLKTIFQMDCIYLCYLCKRMAQHTEQFIENVQSNQILLENFQNIMDETLKSVRTQTQPLVNLTQVPFDVIELSERDINSAEESFSVICSQNMKKVVQVKMEMKEEDYSDHLEGEFINGGDDFPDPYVKDEDDAFPLKALLKEELELQDLDSLDLMSLSATLKKNKRKKKSKIKQEDMQIKSDIPKIKTIYITREQCMEERARMVQDPKYTNFAHKCVNCIKGFSFKGSYDKHMEKHNQCMGDYECDICKQRTDTEDKLVSHMRYHLIRYKCPECGLIRNCRMTIRDHYNAYHSQGFQTCPYCSKSFKRQTSLRKHIHYVHKRKGRVQCAYCQRTYADKSVLRMHMTLKHSTEVSALPVTKQHICQECGMAFKSPSQLKNHSSKHSDIRDYYCVECDKSFKTNATLKNHLKTAAIHVSYLQLPLPCLHCDKRFAIRRDLERHTNRIHLNIKQSFNCDRCDKMYLNNWSLKEHQRRAHDGYKRPLQYPCPMCDKVFDRNQILKGHIRTHTGERPYQCSKCPASFSQANILRTHDRLIHLKLTRDGRPKIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026606;
- 90% Identity
- iTF_01029498;
- 80% Identity
- -