Mlal032594.1
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- -
- Assembly
- GCA_949319445.1
- Location
- OX439375.1:6393724-6412515[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.4 3.3e+02 3.0 1.2 6 23 115 133 110 133 0.90 2 14 1.2e-06 0.00011 23.4 1.7 1 23 139 161 139 161 0.97 3 14 0.57 55 5.5 4.6 1 23 232 255 232 255 0.98 4 14 0.00038 0.037 15.5 1.8 1 23 396 419 396 419 0.94 5 14 0.035 3.4 9.3 1.1 3 23 518 539 516 539 0.91 6 14 0.026 2.5 9.7 0.4 2 23 565 587 564 587 0.93 7 14 0.00035 0.034 15.6 0.7 2 23 610 631 609 631 0.97 8 14 0.00014 0.013 16.9 0.1 1 23 635 657 635 657 0.98 9 14 1.5e-05 0.0015 19.9 1.6 1 23 662 685 662 685 0.98 10 14 0.083 8.1 8.1 0.5 2 23 693 715 693 715 0.94 11 14 6e-05 0.0058 18.0 1.8 2 23 723 745 722 745 0.96 12 14 5.7e-05 0.0055 18.1 2.8 1 23 751 773 751 773 0.98 13 14 1.1e-05 0.0011 20.3 0.6 1 23 779 801 779 801 0.99 14 14 0.0001 0.01 17.2 5.3 1 23 807 830 807 830 0.97
Sequence Information
- Coding Sequence
- ATGGATTTGAAAGTACACACTTTAACAAACCATCGAAATGAAAAGACATTCTACGGTAACATTAAAGCCCAAGGACCTTCTGTGTTCTTAGTCAAACTTGACATCACGAACTTGAAATGTATACTTTGCAGCACTAGTACAGATACTCTTGAAGAAATAATCGTCTATCTGACAGagaaacataataaaaacttcCATACTGagataaaaaatcaaatattcccTGTCAAGTTTAATGATAAACAAGAGCCTACAGTTGTGGAAATCGAAATAGAGACCAATGCTGAAGAAACTGTTCCACCGGTACAAGCTGTAGCTCCACGAAAATATAACTGCATCGCGTGTGACAGGAGCTATCTAACACGGAGTTTCCTCAGCGCACATTTCAGGCGATTCCATCTGAAAGAAAAAAGCCATGAATGCACAGAGTGTGGTAGAGCTTTCTTCAGGAATACCGACCTAAAAAAGCATATGCTAATCCACACAGATAATGAAGAAAAAGTGGCTACAACTACGAAAATCAATACAGAAATTGAAGGAACTACGGAAATTGAAGATACAGTGTCACCCAAGGAAAAACAAATAGCGCCTCGAACACGCACGAAGCGACTACTACGTAAACATCTAAACAATCTGAAAATAATCCTAGAATCTACAAATGCCACTATGATACTCAAACATGGCGATATGGGATACTATTGCTGTTATTGCACGGAAATATGCCAAGAACCCATGGATTTGAAAATACACACTAAGACGAAACATCCAAATGAAGAGAAATTCTATGGCAACATTACAGCTAATGGACCATCTAGGTTCCTAGTCAAACTTGACATCACGAACCTGAAATGCATGCTATgtCGTCAACTAAAAACTGTTGTAACAGAAGAAACAAAGAAAGTACCTACAAAAATTGTAGCCAAgaaaaacttggtacacacggaagaaaaaaaacaaaaaaaaactcctcgATCAGAAAAAATTGTAGCCAAGAAAAACTTTGTACACACGGAACAAAAAACTCCTCGAACAGAAGAGATTGTAGCCGAGAAAAACTTTGTACACACGGAAGaagaaatacaacaaaaaactcCTCGAACAGAAGTGTTTAAACACCGAAATGCTATTAAAGAAATACTTCTAAACTCTAATGCAACACCTATAAGAAGGTATGGAGGGATTGGATACACGTGCTGCTACTGTCCAGAACAGTTCGAGAAACCTGATGATCTAAAAAAACACACTTTGGAAAATCACAACGATATCTTAGAGGCTAATTTTATGATGGACATGAACATGTCCGAATATGTGGTCAAGTTAGACATAACCGCACTCAAGTGTCACGGACGAGGAACTAGGATAATCAAAATAGAAAAACCGACTAAATCTTCCGTTGAATTGAAGTTCATCTCAAAACTAACAGCGAGAAACCCAAATGCCATCCTAAAAGGCTCAACATCAGAAACTATGAAGAATCAAATTAATCTTAAAAACATATTACTCAACTCTAATGCTAACCCCATAAGATGTAAAGATGGTCACGGATATGGCTGTTCTTTCTGTCCAAAACATTTTCAGGAGccgactgctctcaaaaagcaCTTTCTGGAAGAACACAACAATGATAAACTGATAAAGTACAAGACCGCCAAGCTATTTGAACATGTCATCAAGCTAGATATAACGTATTTAAACTGTGCTCTTTGTGACAGAGACGTAAAACATTTGGATGATCTTGTAAAACATCTAAAAGATGAACACAACAAGCCGATGTATCTAGACGCCAAAAGCCAAATCGTCCCGTTTAGATTTGACTCGCCCGAACTAAAATGTGTCATATGCTCCACAGAATTCAGTTCATTCAAACTTTTGCAGGAACATATGAATTCACATTTTGGTAATTATATTTGTGAAATATGTGGAACTGGGTTTGTGACGGATAGACTACTGTTAAATCACGTCAGACGGCATGATAGCGGAGAATATAAATGTGACCAATGTGACAAAACTTTTACGAACCAGATTAAAGTGCGCGAACACATACAGCGAACACACCTAGGTCAGAGTAAAAGAAATAGATGCAATTACTGCGAGGAGAGATTCGTTGATTATTGGAAGAAGATGGACCATATGGTGAAAGAGCATGGAATGCCTCCTGTCGTCCTTAAATGTTCAGCTTGCGATCGAACTTTTAGCGACCAAAGGTCCTTATCGCGGCACACGAAGAAAGATCACCTTTTGGAGAGAAGACACAAGTGTAGTGAATGTGATATGAGGTTCTTTGAAAAGAGTGGTTTGCAGAAGCACATGGCCAAGCACACGGGGCTGAGGCAGTTCAGATGTGAAGTTTGCTTAAAGGCTTATGCAAGGAAGAATACGCTTAGAGAGCATATGAGGATTCATGCGAATGATAGGAGATTCTCTTGTACTCACTGTGGCCAAGCGTTCGTCCAAAAGTGTAGCTGGCGGAGTCATATGCGTTCTAAACATGGTGAAGAAGTGTAA
- Protein Sequence
- MDLKVHTLTNHRNEKTFYGNIKAQGPSVFLVKLDITNLKCILCSTSTDTLEEIIVYLTEKHNKNFHTEIKNQIFPVKFNDKQEPTVVEIEIETNAEETVPPVQAVAPRKYNCIACDRSYLTRSFLSAHFRRFHLKEKSHECTECGRAFFRNTDLKKHMLIHTDNEEKVATTTKINTEIEGTTEIEDTVSPKEKQIAPRTRTKRLLRKHLNNLKIILESTNATMILKHGDMGYYCCYCTEICQEPMDLKIHTKTKHPNEEKFYGNITANGPSRFLVKLDITNLKCMLCRQLKTVVTEETKKVPTKIVAKKNLVHTEEKKQKKTPRSEKIVAKKNFVHTEQKTPRTEEIVAEKNFVHTEEEIQQKTPRTEVFKHRNAIKEILLNSNATPIRRYGGIGYTCCYCPEQFEKPDDLKKHTLENHNDILEANFMMDMNMSEYVVKLDITALKCHGRGTRIIKIEKPTKSSVELKFISKLTARNPNAILKGSTSETMKNQINLKNILLNSNANPIRCKDGHGYGCSFCPKHFQEPTALKKHFLEEHNNDKLIKYKTAKLFEHVIKLDITYLNCALCDRDVKHLDDLVKHLKDEHNKPMYLDAKSQIVPFRFDSPELKCVICSTEFSSFKLLQEHMNSHFGNYICEICGTGFVTDRLLLNHVRRHDSGEYKCDQCDKTFTNQIKVREHIQRTHLGQSKRNRCNYCEERFVDYWKKMDHMVKEHGMPPVVLKCSACDRTFSDQRSLSRHTKKDHLLERRHKCSECDMRFFEKSGLQKHMAKHTGLRQFRCEVCLKAYARKNTLREHMRIHANDRRFSCTHCGQAFVQKCSWRSHMRSKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -