Mlal032588.1
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- -
- Assembly
- GCA_949319445.1
- Location
- OX439375.1:6359239-6363027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00038 0.037 15.5 0.5 1 23 67 90 67 90 0.93 2 20 0.56 55 5.5 0.2 2 23 117 139 116 139 0.93 3 20 0.023 2.3 9.8 1.5 3 23 163 183 161 183 0.91 4 20 4.2 4.2e+02 2.7 0.4 1 14 187 200 187 206 0.89 5 20 0.045 4.4 8.9 4.3 1 23 214 237 214 237 0.96 6 20 0.16 16 7.2 0.9 2 23 245 267 244 267 0.85 7 20 0.00014 0.014 16.8 1.7 2 23 275 297 274 297 0.96 8 20 9.4e-05 0.0092 17.4 0.4 1 23 303 325 303 325 0.98 9 20 3.2e-05 0.0032 18.8 5.2 1 23 331 353 331 353 0.99 10 20 0.15 15 7.3 2.8 1 13 359 371 359 373 0.91 11 20 0.013 1.2 10.7 0.5 1 23 438 461 438 461 0.91 12 20 0.029 2.9 9.5 0.1 2 23 490 512 489 512 0.95 13 20 0.026 2.6 9.7 3.1 2 23 535 556 534 556 0.97 14 20 0.0009 0.088 14.3 0.6 1 23 560 583 560 583 0.91 15 20 0.15 15 7.3 2.4 1 13 588 600 588 611 0.90 16 20 0.073 7.1 8.3 0.5 2 20 619 637 619 641 0.83 17 20 0.00038 0.037 15.5 0.3 2 23 649 671 648 671 0.96 18 20 0.0011 0.1 14.1 1.0 1 23 677 699 677 699 0.98 19 20 8e-05 0.0078 17.6 4.1 1 23 705 727 705 727 0.99 20 20 3.9e-05 0.0038 18.6 2.4 1 23 733 756 733 756 0.98
Sequence Information
- Coding Sequence
- ATGTTCAGTGTTCAACGTAGCGTGAACGCCAAGATTGAGACGGATTGTGACAAAAGAGTGATTCGCAAATGTACCCGAAGAAAAGTCGAACAAGCTGTGGACCTTAAAAtcaatgaattaataaaacaaagaagCAATATACGTCTTATCTTGCAATGTTCCAACGCGACACCAATACGATGCAGAGGAGGCATCGGATATGCCTGCTGTTTTTGCGGGGAACAGTTCCCTGACCCTACAGACTTAAAAAAACACACCCTTGAAGGTCACGACGATAAAACTAAACTTAAGTTCATGGTCGGCAAAATGATGTTTTCGTTCCTTGTCAAATTAGACATCACTAATCTTACTTGTAAGATTTGCGAAAACAAAATAGATTCTTTAAAACAACTTGAAGATCATTTAATCAATACACATGGCAAAAAGATTTACACTGACATTAAGAGCCATATAATGCCGTTTAAGTTCGACGATGATACACTAAGATGCATATTTTGCCAAAacgtctttaataaattcaagaaCTTACAACAGCATATGAACGTTCATTGCAGAAATTACATTTGTGAATtctgcgatgcaggatttataaataaacacatcTTAGCTTGCCACGCAGAAGGACACAAGACGGGTACATTTAAATGCGATTTGTGTTCAAAAGTGTTCGACACACACCGAAAGAAGAAAAGTCACGAAAAATCCGTTCATATCCACGCAAACTTGCTTAGCAAGTGCGGTTACTGTAATGAGAAGTTTACGAATTACAAAAGAAGAGATGACCACATGGCGCAAGCTCACGGAGTTAAGATTAAAGCAATGAAATGTAACGCGTGCGACAAGACTTTTGACCACAAAGGAGCACTGACGATCCACACCAAACGagatcacctgatggaaagacGGTACAAATGTCCAGAGTGCGATATGAATTTCTTCGGTTCTAACGAATTAAAACTCCACATGGTAAAACATACAGGGGTGCGAGAGTATAAATGTACCGTGTGCTTCAAGTGTTATGGACGAAAGAAGACATTGAAAGAACACATGAGAATACACAATGACGATAGAAGGTTTAAGTGCGAACACTGCGGTCAAGCATTTGTGCAGAAATGTACTCGTGATAAACTTATCAAGgatactaaaataaaagaagataaaCCAGAACgaaagaccaagaaaaaatGTCCTACCGAGATTGGTAAAGCTAGGATAGAAATGATGCAAGAGATGAAAAAACACTACTCGAATCTAAAAGAAATCCTAACTTGCTCTAACGCCACCCCTTTTCACGGAGTAAATTGTCGAGGTTTTGTGTGTTCTTACTGCTATTCACAGTTTCCAGACGCTGCAGCTCTGAAGAAACATACTTTTGAAAATCATCAGATCTTAAACAACTCTATAACTcctattgaaaataaaactaggGCAGATGAGTTTTGTGTCAAGCTGGACATAACTGATTTACGATGCACACTCTGCGACACTGACATAGAGTCGCTAGaaaacctaataaaacatttagaaaGCGAACACAGTAGGACTATACACACAGATATAAAAAACCAACTCTTACCATTCAAGTTTCTAAGCGATACAATAAAATGTTGCATATGTCCTAATGTTTATGCAAAGTTCAGAAGTTTGCAAGAACACATGCACACTCATTATAGGAACTTTATTTGCGAAGAGTGTGATATGGGTTTCGTCACCAACAAATGCCTTAAGGCTCACGTAACAGGCACACATAGAAAAGGCGTTTTCAAATGTAGTCTATGTCCTAAAACCTTTGAAACTAAACGCAGAGCACAATGTCATGAACAATTTGTTCACGTACAAAAGGGTATGATAAGAAAGTGTAGTTACTGTAATGAAAGATTTAGAACTGCTGTGAAGAGAGATCAACATTTGGTGGAAGCGCATGGAGTCAAGTTGAAGGTTGTTAAATGCCAGGCATGCGACAGAACGTTTCCCAACACAGGCGCACTCAGGATCCATACGAGAAGAGATCACTTGATGGAAAGACGGTTCAAATGTACACTATGCGACAAGGCGTTCTTCAAAGCTGTCGATTTAAAGTTTCACATGGTAACGCACACAAAAACAAGAGAGTTCCAATGCACTGTGTGTCTGAAGTCGTATTGCCGGAAGGAAACGTTGAGGCAGCATTTGGAAACACACAGTGATACTAAGCGATTCAAATGTGAGCACTGCGGTCAGGCGTTTGTGAAGAGATCTACCTGGAAAGGGCATATGAAGAGTAGGCACGGCGAaacagtttaa
- Protein Sequence
- MFSVQRSVNAKIETDCDKRVIRKCTRRKVEQAVDLKINELIKQRSNIRLILQCSNATPIRCRGGIGYACCFCGEQFPDPTDLKKHTLEGHDDKTKLKFMVGKMMFSFLVKLDITNLTCKICENKIDSLKQLEDHLINTHGKKIYTDIKSHIMPFKFDDDTLRCIFCQNVFNKFKNLQQHMNVHCRNYICEFCDAGFINKHILACHAEGHKTGTFKCDLCSKVFDTHRKKKSHEKSVHIHANLLSKCGYCNEKFTNYKRRDDHMAQAHGVKIKAMKCNACDKTFDHKGALTIHTKRDHLMERRYKCPECDMNFFGSNELKLHMVKHTGVREYKCTVCFKCYGRKKTLKEHMRIHNDDRRFKCEHCGQAFVQKCTRDKLIKDTKIKEDKPERKTKKKCPTEIGKARIEMMQEMKKHYSNLKEILTCSNATPFHGVNCRGFVCSYCYSQFPDAAALKKHTFENHQILNNSITPIENKTRADEFCVKLDITDLRCTLCDTDIESLENLIKHLESEHSRTIHTDIKNQLLPFKFLSDTIKCCICPNVYAKFRSLQEHMHTHYRNFICEECDMGFVTNKCLKAHVTGTHRKGVFKCSLCPKTFETKRRAQCHEQFVHVQKGMIRKCSYCNERFRTAVKRDQHLVEAHGVKLKVVKCQACDRTFPNTGALRIHTRRDHLMERRFKCTLCDKAFFKAVDLKFHMVTHTKTREFQCTVCLKSYCRKETLRQHLETHSDTKRFKCEHCGQAFVKRSTWKGHMKSRHGETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -