Mlal029179.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna lalbum
Gene Symbol
-
Assembly
GCA_949319445.1
Location
OX439370.1:3613320-3642219[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.25 24 6.6 0.1 1 23 497 519 497 519 0.95
2 11 5.7e-05 0.0055 18.1 0.4 1 23 533 555 533 555 0.97
3 11 0.0009 0.088 14.3 2.7 1 23 561 583 561 583 0.97
4 11 1.3e-05 0.0013 20.0 2.4 1 23 590 612 590 612 0.99
5 11 2.6e-06 0.00025 22.3 0.4 1 23 618 640 618 640 0.93
6 11 5.8e-08 5.6e-06 27.5 0.1 1 23 646 668 646 668 0.98
7 11 5.7e-06 0.00056 21.2 1.9 1 23 674 697 674 697 0.96
8 11 0.00014 0.014 16.8 2.7 1 23 703 726 703 726 0.96
9 11 9e-05 0.0088 17.4 2.3 2 23 733 754 732 754 0.97
10 11 1.2e-05 0.0012 20.1 1.0 1 23 760 782 760 782 0.97
11 11 0.0073 0.71 11.4 0.1 1 23 788 812 788 812 0.93

Sequence Information

Coding Sequence
ATGAACCTATGTTGCTTTATTTGCGATAACAAAGCGGGTCTCTCACTGCGAAATGCTTCAAGCCTATTTGGAGAACATAACACATTACAATCCGGAAAGAAAGTGTCAGAGGTAGTGAGTGAGATCGTTGGCAAACCGGTGGTCGAGAATAAAGTTCATACCAAAATACTATGTAAGAAGTGCTTCAAGACTTGTTCGGAGTATGACAGCATTCAAGTCAGattacaaacaataaaaacagaTTTACTAGGTCAATTTAAAGAATCATTAACGAATCATAATTTAAATTACGACAACTATGAGAAGAATGCTGGTTCGCCACCGAAACCTAAGCCAGTCCTGGGGAAAAAGCTTGTGTTGCCAGCATCGAAATTACAACCTATACCACCGGATTTGTTGCTGAAAGTTGGCAAGATGGCTGCGTTTTCTAAAGCTAATATGATCTTACCTCAAATTAAGCCAACCACAGCATCAACTTTAAACCTAAAAGTAACCGTCGGATCATCAGTCctaacacaaacaataaaaacaacaaccaGTAAAACAACAGAAAAACCCAATTTAGACTCAAATTCCCTCCTCAACTCAATCACAAATGCCTTGAAAGATGAACTAGATGATATGGTGACAACGCAAGGCAAAATGAACTCTATGAGCCAAAAGAATTCGATGTTGGGTTTCGATGTGAATTCTTTGCCGAAGGATTTTCTTGTGGGGGCTGTTAAGAAAGTTGATGGGAAAGAGAATGATAAAAATGTGAAGGCGGAAGACGTGAATAATGGTCATTCAATGGAGATTGATGAAGATTGTCTATCTGTGGTACCTGTAACAAGTTCGTCTGGCGGAAACTTAGTGCTACAGGTTGAAGGAATGCAGTCTAAATCCGAAGCTGCTCCTGAAGTCAGCGAGTACCTGAACCTGCCGCTACTTGATGGAGCTGATGGCGAACTGAATGACGCCCAGAAGTACATCCTCGGCAAGTTGGAGATACTGAACGAAGGTGAtgaagacgatgatgatgaagagggACATACAATCGTGGTGGACAGTGAAAATGGCTCGATTCTCCGAATGGTGGCCGGACAGAAGTTCATATACGAAGGTGGTGAGATCTCATTGGTGATGcccgatgatgatgaacaacaAGATGGTGATAATGATGGTGATCAGCTCGAAAACGGTGATAGTCAAGattCCAATGATGAATCTCAAATAGAGCTGCAAGTGTCTGGTGATGAAGAAACTGCGAACGCTATCATCGCTGCTGCTCAGGAGCAAGGCGGGGCCTTCATAAAAGTGGAGTCAGGTGAGATGTACCGCGTCAAGTCAGTGTCGTCGGCTCAGCGATCTGACGCGCTGCAGATTGTCGCGCAGGAAGGCAACCAGTTCAAGTGTCTCCTGTGCGAGAAGAACGACGAAACTCCACCGAGCGTAGAAGACGCTGACACGATGATGCGACACTTGAAATCAGTTCACGACGCGAGGATATACCTATGTCGCTTCTGCGGTGCCGTTATGAGGAGGCGCACGGAATATGCAGCGCATATAGCGTCGCACGCGAGTGGCAGCCCCGAAGTGGTCGGAGCCCGTGCAGGGCACCGCTGCGGCGTGTGCGGCAAGAGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACGTGCACTCCGGCGCGCGCCCGCACTCCTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCTCATCTGAAGACCCATGCGGTTCGCCCGCGCCCTTACAAATGCACTCAGTGCGGCAAATCGTTCCTCACACAACAAAATCTTAATCAGCATGAGAAAACACATTCGGGAGTCAAAGACTTCGTCTGTAATATATGCAATAAAGCCTTCAGCACACAACACAATTTGGAAGTCCATGGAGTTGTTCACTCTGGGAATAAGGCGTTTGTGTGCAATGTGTGTGGCAAGGCGTTCGCGAGGAGAGCCGAACTTCGAGACCACATGCGGATACACACGGGTGAGCGTCCATTCTCATGCGAAATCTGCGGAGCTCGGTTCACGCAGCGCTCCAACCTACACTCGCACCGCAGAGCGACACATTTCGACGATAAGAGATATCACTGTGAACTGTGCCCCAAGAAGTTTAAGAGAAGGAGATTATTAGAGTACCACATAAAGGCGTCGCACACCGGCGAGCGGCCTCTCAAGTGCGGCATCTGCCACCTCTCGTTCGTGTACCCCGAGCACTACAAGAAGCACGTCAGGATACACAGCGGAGAGAGGCCCTATGTTTGCGAGATCTGCGGCAAATCGTTCAACTCGCGCGACAACCGCAACACTCACCGCTTCGTGCACTCCGACAAGAAGCCCTACGAGTGCGTCGCGTGCGGCGCCGGCTTCATGCGCAAGCAGCTGCTCTATGCGCACATGAATACCAGCggacATTTGGCAGAATCAATAGTGGTCAATCAACCTAGAGTCATCAAAGTTACTGAAAATagCGATTCGGCCGAAATTACTCATGTAGAAGCTAAAAATAGTAAATTCCAAACGatcTTTGACGCCAACGAATTAGAGGCGAGCGTAAAATCTGTCGtaaaagcGGAAACGGATGTGAACCTAGCTGATGCCAAGTTCTTCATAACAGATGATAAGAAGTTAATTTTACAAGATACTGATAAAACAACACTGAACCTGATACAGGAAGGCGATGAGTCTACCTTACTAACTATACACAATATAGGAGAGAGAGTTGAAGGTGGAGCTGGTATTCTAGAAGCAGTGGGTGTGGAACAACTGGAGCAACAGACTGAGaTCGTAGCCAACGACGAAAATGGCGGTATGGTGCGTCTTATACAAAttaagttaccggacggtaacAACGGATGGGTTGCTATCAACCGCTGA
Protein Sequence
MNLCCFICDNKAGLSLRNASSLFGEHNTLQSGKKVSEVVSEIVGKPVVENKVHTKILCKKCFKTCSEYDSIQVRLQTIKTDLLGQFKESLTNHNLNYDNYEKNAGSPPKPKPVLGKKLVLPASKLQPIPPDLLLKVGKMAAFSKANMILPQIKPTTASTLNLKVTVGSSVLTQTIKTTTSKTTEKPNLDSNSLLNSITNALKDELDDMVTTQGKMNSMSQKNSMLGFDVNSLPKDFLVGAVKKVDGKENDKNVKAEDVNNGHSMEIDEDCLSVVPVTSSSGGNLVLQVEGMQSKSEAAPEVSEYLNLPLLDGADGELNDAQKYILGKLEILNEGDEDDDDEEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPDDDEQQDGDNDGDQLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVSSAQRSDALQIVAQEGNQFKCLLCEKNDETPPSVEDADTMMRHLKSVHDARIYLCRFCGAVMRRRTEYAAHIASHASGSPEVVGARAGHRCGVCGKSYSSRTLLAEHANVHSGARPHSCGVCGKAFASKYTHQAHLKTHAVRPRPYKCTQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCNVCGKAFARRAELRDHMRIHTGERPFSCEICGARFTQRSNLHSHRRATHFDDKRYHCELCPKKFKRRRLLEYHIKASHTGERPLKCGICHLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGFMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENSDSAEITHVEAKNSKFQTIFDANELEASVKSVVKAETDVNLADAKFFITDDKKLILQDTDKTTLNLIQEGDESTLLTIHNIGERVEGGAGILEAVGVEQLEQQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00726717;
90% Identity
iTF_01028548;
80% Identity
-