Mlal017066.3
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- -
- Assembly
- GCA_949319445.1
- Location
- OX439358.1:12944938-12960649[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00063 0.062 14.8 0.2 2 23 144 165 143 165 0.93 2 14 0.00092 0.09 14.3 2.4 1 23 171 193 171 193 0.96 3 14 0.0001 0.01 17.2 0.3 1 23 291 313 291 313 0.98 4 14 0.00096 0.094 14.2 0.0 3 23 392 413 390 413 0.90 5 14 0.0003 0.03 15.8 0.1 1 23 428 450 428 450 0.97 6 14 0.0003 0.03 15.8 0.1 1 23 502 524 502 524 0.97 7 14 0.0003 0.03 15.8 0.1 1 23 576 598 576 598 0.97 8 14 0.0003 0.03 15.8 0.1 1 23 650 672 650 672 0.97 9 14 0.0003 0.03 15.8 0.1 1 23 689 711 689 711 0.97 10 14 2.2e-05 0.0022 19.4 0.2 1 23 743 765 743 765 0.98 11 14 0.00098 0.096 14.2 0.2 1 23 771 793 771 793 0.97 12 14 0.00055 0.054 15.0 0.3 1 23 799 821 799 822 0.95 13 14 0.015 1.5 10.5 1.1 1 23 835 857 835 857 0.96 14 14 0.045 4.4 8.9 0.0 1 20 1002 1021 1002 1024 0.93
Sequence Information
- Coding Sequence
- ATGGATGGGGAAGGCGAAGACTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGCACAGTCCAGGTGGCGTAGTTGAGACTGAAGAAATGTCAGGTCTAGAAAATGTGCAGCATACAGGATATGCCAATATGACTGCCGAAGAGATGATGAACACGGACCAAATGGCTGCAGAGAACTTGATGTTTCTATCTCAAGACGTAGTGAGCTACACTGAGACGGCCGAACTTGCTGATGACCCTAGTGTGGAGTGTGTCACAGAAGAGGTCATTACGGACGATTGGGTAATTCCTGGTGGGCAGGAAAGGTACCAagtCGAAGTTCCTATGGACCATTTGAATAATGCCGATATAGTTCCGAAAGAAGAAAACGATCTTGATGTTCCTTTACCGACAGATCAAGATGAATACACAGCAATGCGTCCTTGGCCGTGCGACTTTTGTTCACGGCGGTTCAGAAAAAAGGCCGCTCTCATGAACCATATGGTGGCCCATCAGAACGACCGGCCACACGCGTGTAACTTGTGCGGCGTGCGATACGTGCGGAAATGCGACCTCATGAACCATCTCAAGGTTCACGCTTTTGTGCCTGACAACCCTGATTCTATAGACTATGAGGAAGTTTTAGACAATAACCAAATTGTAAAACCAAAGAAGAAACGAGGTCGACGGAAAAAGGTTCCTGAACCTGTGGAGGAGAACGGTATGTGGGAGAACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGCGCGCGCTCACCGGCGCGGCCGGCCTCGCCGCCGTCCCGGCCGGCCTCGCCGCCGTCCCCGCCGCCCGCGCCTcccgcgccctcgccgccgccgccccccAGCGACCCCTCGCGCCCCTTCGTGTGCCGACACTGCGGCGTCGGCTTCGCGAGGGAGAAGGCGCTGCAGTCACATGCTAGGGTGCACGGAGGCGATTCTCCAGTGGAGTGCAGTTCGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCGTCGCACACGGCGCAGCGCCACCCGCACCTGCCGCCGCGCGACCAGCCGCCCGACCCGCCCTTCGAAGACTCCGACTCGGGTGACGATATGGAGTTCCGCCTTTCTCCGCTGTCGCACGGAGCTAGCGAGCGTGCGGTGTACGACACAATGCGTGGACCTGAGTTGTTCTGTCAGGACTGCGGCGTTGCTTTTCAGCGAGCTGACCTGCTCAGGAGACACGTCGCTGCAGCTCACAGTTACAAGCGACACGACAGTTCAAGTAGCACATGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCACGCCGCACTCGCAGCCCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCACGCCGCACTCGCAGCCCAGGTAACTACAACAAGCGTGTGTTACATACAGTCACAGTCACAAGCAGCACATGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCACGCCGCACTCGCAGCCCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCACGCCGCACTCGCAGCCCAGGTAACTACAACAAGCGTGTGTTACATACAGTCACAGTCACAAGCAGCACATGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCACGCCGCACTCGCAGCCCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCACGCCGCACTCGCAGCCCAGGTAACTACAACAAGCGTGTGTTACATACAGTCACAGTCACAAGCAGCACATGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCACGCCGCACTCGCAGCCCAGCACATGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCACGCCGCACTCGCAGCCCAGgttaaaaaaaatggctCGAGGTCGAAACAATACGTCATCAGTGAATAATTTACGACAGTTCCCTTGTAGAGTGTGTGGCAAGGTGTTTGGTTCGCGCAGCTCGCAACAGATCCACATCCGCATCCACACGGGCGAGCGGCCCTACGCGTGTCGGTTCTGCTGGAAGGCGTTCGCGGACGGTGGCACGCTGCGGAAGCATGAGAGGATACACACGGGTGAGAAGCCGTACGCATGTGCGGTGTGCCCGCGCGCCTTCAACCAGCGCGTCGTGCTGCGGGAACACGTGCGCTCGCATCACTCGGCTCCCGACAGGCGCGCCAACGGTGGTCCCGCTTACTGTTGTGTAGTGTGTGGCCGCACGCTGCACTCGAGCGCGGAACTGGTGCAGCACCTCATACAGCATTGCGACGCCAACACAGCGCTCAAGAGACAACCACAGACGGGGCCACGGAAGTACAAGAGACGACGAAAACTTAAGACAGAGTCGCCGGCGACACCACGCGAGTGGGAGCGTCCCTCCCCCTCCCCGCCGCCCATTTCGCGGTCCCCCTCCCCCGTGTCCGACACGCCGCAGCCCTCGCCCCCCTCCCCCGCGTCGCCagtgcgccggcgccgccgagTGGCGTCGCCCGCGCCGCGGCCGCGCATGATCCACACGGAGGAGCGGCCGCGCGGCAAGCTgagcccgcgccgccgccgcgcgcccgGCCGCGCCGCGTCGCCGCAGTCGCCGGCGCGCGCGCGTCCGGTCCGGCGCCGTCCGCCGCGCCGTCCGGCCGACGACCTGCGCGCCATCCGGACGTCcgcgtcgccgccgccggacgCGGCCGGCCCCTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGCGACGCGCTGCTGCTGCACGTGCCGGTGCACATCTGA
- Protein Sequence
- MDGEGEDFNLQWEEEVEVKHSPGGVVETEEMSGLENVQHTGYANMTAEEMMNTDQMAAENLMFLSQDVVSYTETAELADDPSVECVTEEVITDDWVIPGGQERYQVEVPMDHLNNADIVPKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNPDSIDYEEVLDNNQIVKPKKKRGRRKKVPEPVEENGMWENMTSARTQQWSRRARSPARPASPPSRPASPPSPPPAPPAPSPPPPPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECSSCGELCWSREALASHTAQRHPHLPPRDQPPDPPFEDSDSGDDMEFRLSPLSHGASERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRTPHSQPSCWRTPRRTPSDTARRTRSPGNYNKRVLHTVTVTSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRTPHSQPSCWRTPRRTPSDTARRTRSPGNYNKRVLHTVTVTSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRTPHSQPSCWRTPRRTPSDTARRTRSPGNYNKRVLHTVTVTSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRTPHSQPSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRTPHSQPRLKKMARGRNNTSSVNNLRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTESPATPREWERPSPSPPPISRSPSPVSDTPQPSPPSPASPVRRRRRVASPAPRPRMIHTEERPRGKLSPRRRRAPGRAASPQSPARARPVRRRPPRRPADDLRAIRTSASPPPDAAGPYKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -