Mlal010395.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna lalbum
Gene Symbol
-
Assembly
GCA_949319445.1
Location
OX439352.1:7770144-7790182[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.3e-05 0.0091 17.4 2.2 1 23 431 453 431 453 0.97
2 20 0.0048 0.47 12.0 0.6 1 20 459 478 459 481 0.94
3 20 2.4e-05 0.0024 19.2 5.6 1 23 500 522 500 522 0.98
4 20 0.00011 0.011 17.1 4.1 1 23 528 550 528 550 0.99
5 20 4.3e-05 0.0042 18.5 5.3 1 23 556 578 556 578 0.97
6 20 9.8e-06 0.00096 20.5 7.4 1 23 584 606 584 606 0.97
7 20 8.2e-07 8.1e-05 23.9 2.9 1 23 612 634 612 634 0.97
8 20 0.00012 0.011 17.1 6.7 1 23 640 662 640 662 0.97
9 20 0.00012 0.011 17.1 6.5 1 23 668 690 668 690 0.97
10 20 5.6e-07 5.5e-05 24.4 1.9 1 23 696 718 696 718 0.98
11 20 1.1e-05 0.0011 20.3 7.7 1 23 724 746 724 746 0.98
12 20 0.00015 0.015 16.7 6.8 1 23 752 774 752 774 0.97
13 20 2.3e-06 0.00022 22.5 4.2 1 23 780 802 780 802 0.98
14 20 7.7e-06 0.00075 20.8 5.0 1 23 808 830 808 830 0.96
15 20 1.3e-05 0.0012 20.1 5.2 1 23 836 858 836 858 0.98
16 20 2.7e-05 0.0026 19.1 5.9 1 23 864 886 864 886 0.98
17 20 6.8e-05 0.0067 17.8 7.9 1 23 892 914 892 914 0.97
18 20 1.5e-05 0.0014 19.9 6.6 1 23 920 942 920 942 0.97
19 20 0.00084 0.082 14.4 0.3 1 23 949 971 949 971 0.96
20 20 0.36 35 6.1 4.9 1 23 983 1005 983 1005 0.99

Sequence Information

Coding Sequence
ATGAATCAGGATCACCATAATATGAATACGGGTGGTGGCCAGCCTCCGGGAAGTTCAGAGTCACAGGGCCAAAGAGTTCAAGTCACCCAGCAGCAACAACAAAATAACTTGCCTGCCACGACATCCGCAACTGATTTGCGAGTGAACTCAGCAGCAGTGAATGTTGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTATTCCCCGGACCTATACCGCAAGTGTCTGTGTACGGATTGCCCGCCGGTGCCAGGATTGAAAATGGAAAGCCTGTCCAGGACCTAGGACAAGCTCATGCAAGTATACTAAATGGGGATCCAAATATTATACTTGGCCATCATGCGGGTCAATCCCAAGTTACAGTGTCTGCTGCCGGTGGTCAGCAGATACCTGTCTCACAAATCATTGCCACACAATCAGGACAAACCCATGAAGCTCTTGTGGCCCATAGTCAGCAACAGGCTGAGCTGGTGGCGGCCCAGGGCTCCGGAAACAACGCGCAAGTGTCAGTTAGTGCAGGCCAGGCCACTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGggtCACCATTCACAACAACACATAATGCAGCAGCAACTGATGGCACAAGCGAGACCAGAACACAGCAACCAACAGATTCAACTGACGGTAAGCGAAGATGGCATCGTTACTGTGGTGGAACCGGCTGGCACAAAAATGGTTGACAAGGAGGAACTCCATGAGGCCATCAAGATGCCCAACGACCACACACTCACTGTTCATCAGCTGCAGCAGATTGTGGGACAACAGGTTATGGACAGCGTAGTACGCATAGAGCAGGCCACTGGCGAACCAGCCAACATCTTAGTGACCCACAATCCTGACGGTACGACGTCTATCGAAGCCAGTGCCGCCGACCCAATGATTGTCAAGGATGAGAAGAGTGCTAACAAAATAGAAACCGCTCAGTTTGCTATACCTGCTGAGATAAAGGATATAAAGGGAATTGACTTGAAGAGCGTAGGAGCCTTGGGTATGGAAGGTGCCGTAGTGAAGATATCAGCTGGCGCGTCAGAACACGACCTCCACGCGATGTACAAAGTCAATGTAGAAGATCTGTCACAACTCCTCGCCTATCATGAAGTCTTTGGAAAATTAAACTCTGAAGGGCAGCAGCAACAAGCTAAGGTAATAAGTGAAGTGGAAGTGGAAGTTGAAGCCGGTACCAGTGCAGCTATGTCGGAAGCCGAATCCTCACCCGGCCACCACTCATGTGATATTTGCGGGAAAATATTCCAGTTCCGATACCAACTTATTGTTCATAGGCGTTACCACGGTGAAAGTAAACCATTTACGTGTCAAGTTTGCGGTTCCGCATTTGCAAATCCCGTCGAATTGTCGAGACATGGAAAGTGCCATCTTGCTGGCGACCCAAACGAAAGGCACGCCAAGAGGATGGCGCAAGATAAACCATATGCATGCACGACTTGCCACAAAACTTTCTCCCGCAAAGAACATTTGGATAATCATGTTCGAAGTCACACTGGGGAAACTCCTTACAGATGCGAGTTCTGCGCTAAGACTTTCACCCGCAAAGAGCACATGGTCAACCATGTACGAAAACATACGGGCGAAACTCCGCACCGTTGTGACATCTGTAAAAAGAGTTTCACGAGGAAAGAACACTTCATGAACCATGTTATGTGGCACACAGGTGAGACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGTGAACTGTGCGGCAAATCGTTTACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAAACCCCTCACCGTTGCGACTTCTGTTCAAAAACGTTCACTCGTAAGGAACATCTTCTGAACCACGTCCGCCAGCACACGGGCGAGTCTCCTCACCGCTGCAACTTCTGCAGCAAGTCTTTCACAAGGCGAGAACACCTCGTCAACCACGTGCGACAGCACACAGGGGAGACGCCCTTCCAGTGCGGATACTGTCCTAAAGCTTTCACGAGGAAGGACCACCTCGTGAATCACGTCCGTCAGCATACAGGCGAATCCCCGCACAAGTGTTCGTACTGCACAAAGTCCTTCACTCGCAAGGAGCACTTGACGAATCACGTGCGACAACACACGGGCGAGTCCCCGCATCGATGTACTTTCTGCGCCAAGTCCTTCACGAGGAAGGAACACCTCACCAACCACGTCAGACAGCACACGGGAGAAACGCCACACAAGTGCACGTACTGCCCGCGGGCCTTCGCGCGCAAAGAGCACCTCAACAACCACATCCGCCAGCACACAGGCGTCACGCCGCACGCCTGCTCCTACTGCAGCAAGAGCTTCACAAGGAAGGAACATCTCGTTAACCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTTCTGTTCAAAGTCGTTCTCTCGTAAGGAGCATCTCACGAACCACGTGAACCTTCACACAGGAGCAACGCCCCACAAATGTGCTTTCTGCTCAAAAACATTTTCCAGGAAAGAGCATTTGACCAACCACGTCAGAATTCACACGGGAGAGTCTCCGCACCGGTGTGACTTTTGCCAGAAGACGTTTACTCGTAAGGAGCACTTGACGAATCATCTGAAGCAGCACACCGGCGACACCGCACACGTCTGCAAGGTGTGCAACAAGCACTTCACCCGGAAAGAGCATCTTGTCACGCACATGAGGGCGCACAGTTGTGGCGAGCGTCCATTCAGTTGCGGCGAGTGCGGCAAATCTTTCCCGTTGAAAGGCAACCTACTGTTCCATGAACGGTCGCACAACAAGAACAATGCCAATGCTGCCAATAAGCAGTACCGATGCGAAGTCTGCTCTAAAGAGTTCCTCTGTAAAGgCCATTTGGTGTCTCATCGGCGCACACACGCAGAGTGGGCGGAAGGTGCCGCAACAGGCGAGGCGCCCGCTGAAACAGAAGACTGTACTGATAATAAGTGTATCAAAGTTGAGCCGGAACGAACTGAAAGGAAACATGAAGTCAGGACATCAGTCGAAACGAGACCAGTCGAAAATAATGTCGCACAAAGTCAACCAAACACAGCTACAGTTATGATAACTAATAATCAACAAGTACGGCCGGCGAACGTGAGCGCAGTGAGCGGCGTGGGTGGCGTGAGCGGCGTGGGCGGGGTGGGCGGCGTGGGCGGGGTGGGCGGCGTGGGCGTGGGCGCGGTGGGCGGCGCGGGCGTGGCGCCGACGTTCGCGCAGCACCACGCCGGCGCCAGCATCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNQDHHNMNTGGGQPPGSSESQGQRVQVTQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHSQQQAELVAAQGSGNNAQVSVSAGQATHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMAQARPEHSNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVMDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPMIVKDEKSANKIETAQFAIPAEIKDIKGIDLKSVGALGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGATPHKCAFCSKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCNKHFTRKEHLVTHMRAHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANAANKQYRCEVCSKEFLCKGHLVSHRRTHAEWAEGAATGEAPAETEDCTDNKCIKVEPERTERKHEVRTSVETRPVENNVAQSQPNTATVMITNNQQVRPANVSAVSGVGGVSGVGGVGGVGGVGGVGVGAVGGAGVAPTFAQHHAGASIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00707182;
90% Identity
iTF_01030446;
80% Identity
-