Mimp050644.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990365.1:10721354-10725348[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 2.3 10.6 0.5 1 23 90 113 90 113 0.95 2 11 0.39 61 6.1 0.9 2 23 186 209 185 209 0.85 3 11 0.0077 1.2 11.5 0.4 1 23 213 235 213 235 0.96 4 11 0.015 2.3 10.6 0.5 1 23 368 391 368 391 0.95 5 11 1.8 2.9e+02 4.0 0.8 8 23 472 487 463 487 0.82 6 11 0.00047 0.073 15.3 0.2 1 23 491 513 491 513 0.98 7 11 0.17 27 7.3 4.1 2 23 549 571 548 571 0.96 8 11 0.00023 0.036 16.3 0.5 1 23 578 601 578 601 0.98 9 11 0.00017 0.027 16.7 4.9 1 23 607 629 607 629 0.98 10 11 1e-06 0.00016 23.7 1.3 1 23 635 657 635 657 0.99 11 11 9.3e-07 0.00015 23.8 0.5 1 23 663 686 663 686 0.96
Sequence Information
- Coding Sequence
- ATGATTTTCTTTATAGATGAACAACCAAAAGTGACTACTGGTACGGAAATCAAAATAGAGCCGAAAGCTGAAGAATCTGTTCCACCTAAGAAACGgaaaaaagaaactataactAAGGAagagaaaatacaaataaaaccaAAGGCATCGCCCCGACCGCGTAAAAAGCGACTACTACACAAGCATCTACACAATCATCTACACAATCTTAAAATTATCCTAGAATGTACTAATGCCACTATGATACTCAAACATGGAGACAAGGGATATTTGTGCTGCTATTGCACGGAAGGTTTCGAAGAGCCTATGGATTTGAAAGTACACACTTTAACAGAACATCGAAATGAAGAGAAATTCTACGGCAACATTACAGCCAATGGACCTTCTATGTTCTTAGTCAAACTTGACATCACGAACTTGAAATGTATGCTTTGCAGCACTAATACAGATACTTTCGAAGAAATAATCGTCCATCTAAcagataaacataataaaaacttcCATACTgatataaaaaatcaaatatttccaTTCAAGTTTAATGCGAAGCAACTGAAATGCTACCATTGTGCAAATGACGTCGTTTTTGCCACATTCAGAGCTTTACAAGAGCATATGAACAAACATTACCGATACTTCATTTGTACAGAATGTGATGCTGGATTTATTAATCATTTGTCACTATCTAGACACAGTCTCATTCACACGAAAGGGACTTTTCCCTGCCGTCATTGTCCTGTTGTATTGGACAACACGTTCAAGAGAAGCAGTCATGAGTTACGAAGCCACAGCCGAACAGatAAACAAGAAAAAGTGGCTACAGCTACGGAAATTAAAGAAGAGCCGAAAGCTGATGAAACTGTTTCACCTAAGAAAGAGCAAAAAGAAACTATCTTACCTAAGATAGAGCAAAAAGAAACTTTCATACATAAGGAAGGGCAAAAAGAACCTGTAGTGTCTAAGGAAAAGCAAATACAAATGAAACCAGAGAAAGCACCTCGACCACGTATAAAGCGATTATTACACAAGCATCTACAcaatctaaaaataattttagaatcTACTAATGCTACTATGATACTCAAACATGGAGATAAAGGATATTTGTGCTGCTATTGCACAGAAGGTTTTGAAGAACCCATGGATTTGAAAGTACACACTTTAACGGAACATCAAAATGCTGAAATTTTTTACGGAAATCTTAAAGCGAAAGGACCATCTATGTTCTTAGTCAAACTTGACATTACGAATCTGAAATGCATGATTTGCAGCACTAATATGGATACTCTTGAAGACATTATCGTCCATTTAACAGAGAAACACAATAAGAACTTCCATACCGatattaaaaatcaaatatttccaTTCAAATTTAATGCGAAGCAGCTGAAATGCTACCAATGTGCCAATGATGTCGTTTTCGCCACATTCAGGGCGTTACATGAGCATATGAACAAACATTACCGATACTTCATTTGCTCCGAATGTGATGCTGGATTCATTAATCAATTATCATTATTTAACCATCGCCTCACTCACACGAAAGGGAATTTCCCCTGCCGACATTGTTCTGTCGTATTCGACAATATGCTCAAGAGAAGCAGTCACGAGCTGCGAAGCCACAGTCGAACTGGACATTCAAGTAGATGCCATTTATGTAATGAAAGTTTTAGGGAACATATTGAAAAGAAATCACATCTGTCTACAGTTCATGGAGTTACAACACCTATATATGAATGCACAGCATGTGACAAGAGCTTTTTTACCAATAGTATTCTCAGGGCACATGTCAGGCGGGTCCATCTGATGGAAAAGAAACACAAATGTTCCGAGTGCAACAAGGCCTTCTTCGACGGTTGCGATCTGAAGAAACATATGTTGACTCATACGGGAGCGAAAGACTTCAAATGTGAAGTCTGTTCGAAGTTTTTTGCCGAGAAATCTACTCTGAATCAGCATATGAGGATTCATAATAATGATAGGCGTTTTAAATGTACAATGTGTGATAAGGCGTTTGTGCAAAAACCTAGCTTAACCTGGCACATGAAGGCAACGCATGCAAATGCTTATGCTACTTAA
- Protein Sequence
- MIFFIDEQPKVTTGTEIKIEPKAEESVPPKKRKKETITKEEKIQIKPKASPRPRKKRLLHKHLHNHLHNLKIILECTNATMILKHGDKGYLCCYCTEGFEEPMDLKVHTLTEHRNEEKFYGNITANGPSMFLVKLDITNLKCMLCSTNTDTFEEIIVHLTDKHNKNFHTDIKNQIFPFKFNAKQLKCYHCANDVVFATFRALQEHMNKHYRYFICTECDAGFINHLSLSRHSLIHTKGTFPCRHCPVVLDNTFKRSSHELRSHSRTDKQEKVATATEIKEEPKADETVSPKKEQKETILPKIEQKETFIHKEGQKEPVVSKEKQIQMKPEKAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYLCCYCTEGFEEPMDLKVHTLTEHQNAEIFYGNLKAKGPSMFLVKLDITNLKCMICSTNMDTLEDIIVHLTEKHNKNFHTDIKNQIFPFKFNAKQLKCYQCANDVVFATFRALHEHMNKHYRYFICSECDAGFINQLSLFNHRLTHTKGNFPCRHCSVVFDNMLKRSSHELRSHSRTGHSSRCHLCNESFREHIEKKSHLSTVHGVTTPIYECTACDKSFFTNSILRAHVRRVHLMEKKHKCSECNKAFFDGCDLKKHMLTHTGAKDFKCEVCSKFFAEKSTLNQHMRIHNNDRRFKCTMCDKAFVQKPSLTWHMKATHANAYAT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -