Mimp048030.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990364.1:9720043-9738912[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.5e-05 0.013 17.6 0.4 1 23 532 554 532 554 0.99 2 11 0.0082 1.3 11.4 7.9 1 23 561 583 561 583 0.94 3 11 0.082 13 8.3 0.9 1 23 587 609 587 609 0.97 4 11 0.015 2.3 10.6 0.9 1 23 614 637 614 637 0.98 5 11 0.002 0.31 13.3 0.3 1 23 641 664 641 664 0.94 6 11 2.5 4e+02 3.6 0.5 3 21 678 696 677 701 0.91 7 11 9.6 1.5e+03 1.7 0.7 2 23 745 767 744 767 0.91 8 11 0.0096 1.5 11.2 2.6 2 23 783 804 782 804 0.95 9 11 1.2e-06 0.00019 23.5 2.9 2 23 811 832 810 832 0.97 10 11 5.2e-06 0.00081 21.5 1.1 1 23 839 861 839 861 0.98 11 11 9.1e-06 0.0014 20.7 0.1 1 23 867 890 867 890 0.97
Sequence Information
- Coding Sequence
- ATGGAACGTGATAACCAGGTCGAAATAAAGGTGTGCCGAGTGTGTCTAGCTTTGGATGTCAAGATGTTTGATATGGAGGACTTCAATTTGAGTGAGATGTTAAAGAATGTCACGGGAATATCGGTATGCGACAAAAAGGACAGCATACTCCATCGCGTTTGTTGGGAGTGTGCTGCACGGCTCTCAGCAGCTGCAGCGTTCAGGAACAAAGCGCTGCTCAGCGATGCATTGCTGAAAAATATAGCACACATGAACAAAAGCGACATCGCAAAATTAAAGCATCAGTATCGTAGCATTCTCAATTCACCCCTTATCAATCGAACTGTATTCACTTCATCTGATATTGGATGCGAAGATATCAGCCCTGACCACAAAGAAATGGAAATTCTTACTGATGAAACAGAGTTTGGGGACGACGAATCCTTAGAGAATTTACCTCTGGAAACTGACGTTGGATCTAGTCCTATAGCAGAAAATAATTCCAATTTTCAAACCAAacatatgaaaaacaaaatatttcctGGACTCGTACATTTCGATGATAGTATGTCGTCTGACCGAAATAATAGTGAAAATGCAATAGAAAACAGTGaagcctataataataataatgttctaaATGAAGCCACCGTAATGACTAACACACCTCTAACAGAAAAAGATTCCAATATTCAAATCATACATATGAATAGTGAAATATTTTCAGAATCCACAGACACAACAGAAAACAGTGAAGTATATTATCGTAATAATGATAAAGTTTTAAGTGAAGATGACGTAATGACTAACACACCAATAAATGATGATTGCTATGTAGTTATAGTAATAGGTGATGACGAAAATAGCCCAAAGTTAGAGGTGGTCGGTGATAGTGTAAATGAGTCCTTGAGTGAAGAAGATACACAGAGTCTAGAAGTAGCATCTGCCAATAATGCTAAGAAAATGACGATCAGGAAGGTTGAAGCTTCGTGTGAACAAGGAAACGGGCTCAATGTCGGGGAGAAACAGAAAATTATTACGTTAAAGGAAAAATGTCTCTCGTTGTCAGAAATATCTGAAAAAATGGGGAAATTGttaaccGACCAAAACATAAAGACAGCAAACCAATTGAATAACCAGTTAGCTCTCAGTTTATCATCAAAACACTTGAAACACATTACAATTCAGGACAAATCTCCACAGACTTGCAATGTTGACGTCAAAGACGACTACGAAGTATTCCTCACAGAAGACATCACGGATAAGGACGACGATGGACTTAATAGCCCCGGTATTAACGACCCCGGATTTTACGACGGCGAAATTGCAGATACGGTTGTTGTAAACGACAAAGATGATACGTTTGAAGAAGAATACGTGTtgtgtgataaagaaaataattccTCAGACGATAGTCTTCCTTTAGAAAACTGTAATGCGAACAAAACGCGAAAAATTAAAGAGAAGGCAGACAAAACCGGAAACCGAgtgaaaaaagtaaaagtaaacGATGATTTGTTAGAACCTTTTTTTACGATTACGGATTTGACGTTGGAAGAACAGATAGCTGAGATCGTGGGAAGGCAGATGAGTTCGAATTATAAGAATTCTATTTATAAGTGTTCCATGTGTTTTAAAGGGTTCGTGGATGAAGATGCTTACAATATTCATATGTTGAGGCATACTGATcgcaGCGGCGAACACGAATGCAAGATCTGCAAGATGCATTTCAAAAACCCGCATTATCTCAATAAACACACGTTTTTACACTCTCAAAGTTACAGCTGCAATCAGTGCACGTACGTCACTAAGAATCGGCAGACGGCGACGCTACACGCGCGCTGGCACATGGGGACCAAGTACAGATGTCCGCATTGTCTGGATGAGTTCGATCAATGGTCAACTTACATGGGCCACCTCCGCATCAAGCACCCGTCAGACTTCGTATGTGAGATTTGCGGCTACTCCTTCGTCAGCGCCAAAGGCCGAGAGCAACATAAGAATCTGAAGCATCCATTTGAGAATGTACAGATACCAGAAGACGGTCCATTGTGCGAGCTGTGTAACGTGAGGTTCATCTCATCAGAGGCGCACAAACGACATCTCAGTGTTTCGGCTAAACATAACACAGACAACGACTCGAGGGAACGGAACCATTCCAAGAGGGGTCCACCGGTGCGGAACGAGGATGGTAATAGTGACGAAAGGAGACGACGAAGAGAGAAAAACCGGCAGAAGGTGGAGGGACCGATACCTTGTGAACAGTGTGGTATCCAACTACAAGGCTCCCGGGAGTACCACTCTCACTTCAAACGCATGCACCCCGACAAGAACAGAACCAACTACCCCGCCATGAGGTACCCCTGCATGTGTGAAGTGTGCGGGAGAATGTTCCAGGGTACCACTCATCTTAGAGACCACACCTTGGTACACATGGGCGGGAGTACCTTGAAGTGTGAGACGTGCGGCAAGGCGTTCAGAACGAAGCATAATCTGATGATGCACCAGCGCCTGCACAGCCAGGTGCGCCCCAGCTACGAGTGCGCGCTCTGCGGGAAGAACTTCTCCAATTACAGCAACAGGCAGAGGCATCTGTTGACCCACGCCGGCGTAAGACCCTTCAAATGCGAGATATGTGGCAAAGGGTTCAAGGTTCCAGGTGAGATGCGAGCACACATAAATTACGTGCATCTGAAGAAACCCTGGCCGAAAAGAAATAGAGAAAAGCGGGGATCGGAGACAAGACagaagctgcagGTCCACATCCCCCGCGGAtgcgggtga
- Protein Sequence
- MERDNQVEIKVCRVCLALDVKMFDMEDFNLSEMLKNVTGISVCDKKDSILHRVCWECAARLSAAAAFRNKALLSDALLKNIAHMNKSDIAKLKHQYRSILNSPLINRTVFTSSDIGCEDISPDHKEMEILTDETEFGDDESLENLPLETDVGSSPIAENNSNFQTKHMKNKIFPGLVHFDDSMSSDRNNSENAIENSEAYNNNNVLNEATVMTNTPLTEKDSNIQIIHMNSEIFSESTDTTENSEVYYRNNDKVLSEDDVMTNTPINDDCYVVIVIGDDENSPKLEVVGDSVNESLSEEDTQSLEVASANNAKKMTIRKVEASCEQGNGLNVGEKQKIITLKEKCLSLSEISEKMGKLLTDQNIKTANQLNNQLALSLSSKHLKHITIQDKSPQTCNVDVKDDYEVFLTEDITDKDDDGLNSPGINDPGFYDGEIADTVVVNDKDDTFEEEYVLCDKENNSSDDSLPLENCNANKTRKIKEKADKTGNRVKKVKVNDDLLEPFFTITDLTLEEQIAEIVGRQMSSNYKNSIYKCSMCFKGFVDEDAYNIHMLRHTDRSGEHECKICKMHFKNPHYLNKHTFLHSQSYSCNQCTYVTKNRQTATLHARWHMGTKYRCPHCLDEFDQWSTYMGHLRIKHPSDFVCEICGYSFVSAKGREQHKNLKHPFENVQIPEDGPLCELCNVRFISSEAHKRHLSVSAKHNTDNDSRERNHSKRGPPVRNEDGNSDERRRRREKNRQKVEGPIPCEQCGIQLQGSREYHSHFKRMHPDKNRTNYPAMRYPCMCEVCGRMFQGTTHLRDHTLVHMGGSTLKCETCGKAFRTKHNLMMHQRLHSQVRPSYECALCGKNFSNYSNRQRHLLTHAGVRPFKCEICGKGFKVPGEMRAHINYVHLKKPWPKRNREKRGSETRQKLQVHIPRGCG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026324;
- 90% Identity
- iTF_01026324; iTF_01026704;
- 80% Identity
- -