Mimp056552.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990369.1:18139587-18141575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.21 13.9 0.9 2 23 306 328 305 328 0.89 2 10 0.22 35 6.9 1.5 1 23 334 356 334 356 0.98 3 10 3.2 5e+02 3.2 2.0 1 23 362 385 362 385 0.92 4 10 0.02 3.1 10.2 0.0 1 21 390 410 390 411 0.94 5 10 0.00082 0.13 14.5 1.7 2 23 429 450 428 450 0.97 6 10 1.3e-05 0.0021 20.2 1.1 2 23 458 479 458 479 0.97 7 10 0.00088 0.14 14.5 2.7 1 23 485 507 485 507 0.96 8 10 1.6e-05 0.0025 19.9 5.5 1 23 513 535 513 535 0.98 9 10 2.4e-06 0.00037 22.5 1.7 2 23 542 563 541 563 0.96 10 10 3.1e-05 0.0048 19.0 1.2 1 23 569 592 569 592 0.98
Sequence Information
- Coding Sequence
- AtgaataatacaaaaaatgtcTACTGTCGTCTTTGCGCGGAGCTAAAACCGCACAGCGAACTTGCAAACCTGCAGATTGATGAGGAAACATGCCAGAAGGTCGTCAACAAACTGTCAAGATTCAATATAATGATGGATTTCCAGGAGAATGTCTTGCCGAAGACAGTTTGCTTACTGTGTGTGAGTTCTTTAGAACGAGCATTTTCTTTCGTAATTGCAGTGGAACAAGCCCAGTCATTTCTTAGTGACTTTATTCTAGTACAAGCACGGACTGAAAAAAGTGATACATATAatgaatttgatttttatattcCATCAAATATTGGTAAAGATACTACTGATATTAAAGTCGAAAGTAGACGAGACCCAGTGGATGTAAGTGACAACGATCCAAACTTTGGTGATGAATGTGATGATCAAAATGATAATagtattgatgatgatgatgaaactaagGATCCTACAAAATCATATGTTTTTGTTGATGAAAAGATTAATATAAAAGATGAAAGTGATGAATGCAATGCAAATAATCTTAAAGATAAATCTCTTAATTTTAGAAATGACTGTTTAGAATATCAATACACCAATGTTATagataatgattttaaaatacaagTTTCAACCACAAAAACTTCTAAATTGGAAGAAAGTGTGAAAGATATAGAACATAATCCTAAACCTAAGCCACTATCGAACAATACAGGTTATTCTGAAGatgatataaataaactaaatgtcAAAACTGTGGGTGCAGGTGTACCGCATAAACGTAAGAAATCTGTTGTTCAATCAATCCCAACAAAACTTTTGGATGCTACAGTATATTCTGAAGATTACAtaactaaacaaataaacaaattaagcaCCGTCCCTGTGCAATGTATAAAAATGACATGGATGGATTACGAATGGAAGTGTTCCCACTGTGGTACACTTTTTTCAACTATAGAAGAGCTACAGAAACATTCAATTCTGTATCACACCACCTGTAATGCTTACCAATGCACTGATTGTAAAATCAAAAAGCAACGGCTCAACGCATTTATTAAACACGTCAGATCTCACAGGAAGTACTTACATTATTCATGCTACAAATGCTTTGAAAAATTCCCTAAAATGATGGAAACGAGGCAACATAAGATAAAAATTCACGAGAACTCTAGATTTGTTTGCTTAGGGTGCAATACACCTTTTGCTAGTAACACTGAAATGGAGGAACATGTCAATAAATACTATAACATTTTATGGAGGCAAAAAACTTTTATAGATAGTGGTAATTTGACATGCAGTACGTGCAATAAGGTTTGTGCAAATGTAACCGCTTTAAGAAACCATTTAAATAGGCACAAAGAGAAGAAGAGAGATCGAGTGTGTGACCGATGTGGCAAATGTTTTGATAGTGCACCAAGTTTAAGAACTCATatggatacacacactgaaAAGGTTTTATATCATTGTGAAATTTGTAAAACAACctttaaaactgtttattcaCTACGATACCATGCTAGCATTCACTCTGGAATCAAACCGTTTACCTGTGATGTTTGCAACAAATGTTTCAGGACCCGGAGTCAGATAACCAATCACATGAAATTCCATACAGACTATTTTCCTATTACTTGCTCAGTTTGCAACAAGAAGTTTCGTACAgagaaaaatttacaaaatcacATGCTTCAGCATACTGGAGAGAAACCATTTTCTTGTGACATTTGTCCGAGAGACTTTACGAACATGGCTAACCGTAACAAGCACATGAGACGCAGACATGGAATTGAAATGGCCAAAAGAAGGCAACCTATTATAAAACAGCAAACGACTGATGACCCGATCACCTTCAACCTAGTGGCGGAAGATAATAAATCTGGAGATCTAGGCACCACAGATGATTGGAACCACAAAATGATTCAGCAAAAAAATCAAAGGGTaaacaataaaagtaaaaaagacaGAATAATTAGTAAACAATACAATGAGAATTGA
- Protein Sequence
- MNNTKNVYCRLCAELKPHSELANLQIDEETCQKVVNKLSRFNIMMDFQENVLPKTVCLLCVSSLERAFSFVIAVEQAQSFLSDFILVQARTEKSDTYNEFDFYIPSNIGKDTTDIKVESRRDPVDVSDNDPNFGDECDDQNDNSIDDDDETKDPTKSYVFVDEKINIKDESDECNANNLKDKSLNFRNDCLEYQYTNVIDNDFKIQVSTTKTSKLEESVKDIEHNPKPKPLSNNTGYSEDDINKLNVKTVGAGVPHKRKKSVVQSIPTKLLDATVYSEDYITKQINKLSTVPVQCIKMTWMDYEWKCSHCGTLFSTIEELQKHSILYHTTCNAYQCTDCKIKKQRLNAFIKHVRSHRKYLHYSCYKCFEKFPKMMETRQHKIKIHENSRFVCLGCNTPFASNTEMEEHVNKYYNILWRQKTFIDSGNLTCSTCNKVCANVTALRNHLNRHKEKKRDRVCDRCGKCFDSAPSLRTHMDTHTEKVLYHCEICKTTFKTVYSLRYHASIHSGIKPFTCDVCNKCFRTRSQITNHMKFHTDYFPITCSVCNKKFRTEKNLQNHMLQHTGEKPFSCDICPRDFTNMANRNKHMRRRHGIEMAKRRQPIIKQQTTDDPITFNLVAEDNKSGDLGTTDDWNHKMIQQKNQRVNNKSKKDRIISKQYNEN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01030526;
- 90% Identity
- iTF_01029552;
- 80% Identity
- -