Basic Information

Insect: Mythimna impura
Gene Symbol: -
Assembly: GCA_905147345.1
Location: LR990357.1:8404105-8406971[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.9e-06 0.00045 22.3 5.1 1 23 256 278 256 278 0.97

2 11 0.00041 0.065 15.5 1.4 1 23 284 307 284 307 0.95

3 11 0.00041 0.064 15.5 0.6 1 23 317 339 317 339 0.98

4 11 0.0057 0.89 11.9 2.0 1 23 346 368 346 368 0.97

5 11 6.7 1e+03 2.2 5.7 1 23 374 396 374 396 0.96

6 11 0.00013 0.02 17.1 0.3 1 23 402 425 402 425 0.95

7 11 0.0056 0.88 11.9 1.6 2 23 431 450 430 450 0.96

8 11 9.3e-07 0.00015 23.8 1.0 1 23 456 478 456 478 0.97

9 11 0.00011 0.017 17.3 1.8 1 23 484 506 484 506 0.98

10 11 3.3e-05 0.0053 18.9 0.9 1 23 512 535 512 535 0.97

11 11 0.054 8.6 8.8 0.5 1 20 541 560 541 562 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.9e-06	0.00045	22.3	5.1	1	23	256	278	256	278	0.97
2	11	0.00041	0.065	15.5	1.4	1	23	284	307	284	307	0.95
3	11	0.00041	0.064	15.5	0.6	1	23	317	339	317	339	0.98
4	11	0.0057	0.89	11.9	2.0	1	23	346	368	346	368	0.97
5	11	6.7	1e+03	2.2	5.7	1	23	374	396	374	396	0.96
6	11	0.00013	0.02	17.1	0.3	1	23	402	425	402	425	0.95
7	11	0.0056	0.88	11.9	1.6	2	23	431	450	430	450	0.96
8	11	9.3e-07	0.00015	23.8	1.0	1	23	456	478	456	478	0.97
9	11	0.00011	0.017	17.3	1.8	1	23	484	506	484	506	0.98
10	11	3.3e-05	0.0053	18.9	0.9	1	23	512	535	512	535	0.97
11	11	0.054	8.6	8.8	0.5	1	20	541	560	541	562	0.92

Sequence Information

Coding Sequence: ATGGCTAACGTAAAGAGTAGATTAAAAGCACCCAAAAGTGCATCTACAAAGAAGAAAAACCAAggacctaaaacaaaaaaatcgtcAGCAGGTCCCAAGAAGTCACCCCCGAAGAAAGATGATTTAGATAGTAATGTCGTCATGAAACGGCCGAGCACCCGCCCGGTATTAACACCGgatcaaaaggttaaatttttactaaaaaatggACACAAACTCAGGGAAAGATTTATTGCAAAACCACCTGTGAATGTTAAAAAAATTCCTGAGGCAATTGTTGAGTCCAATCCTAAGCCTGCTGAGGAGCCTAAGGGAAGTCACAGAAAAAAACAAGCCAGCAATCTGCCTCTTATGTCAAAAAGTggacacattaaaaaaagaaagaaaaagtgcAATATTAAACTTATTGACAGTATTCTGAAAAATGAACTGATGATTGGTGACCGTCGGAAGACTGTAAACACTGATGCACCTACTACACCTATAGTGGTGCCCCCATCAATGGACATATCGGCTTCAAGAGTTCGAGTGGACAATAACAATGATATTGAAATAACAGACCAAAATAACAAATCTAAAGAATTTGATGACGAAGTAGTTAATTTATCTGATTTGTCTGAAAATTCAGAAGATTCAACTGATAATGAAAATAGCTCAGATGACTTAAATGGAAAAGCTGGTGCAAActcttcaaaaaagaaaaaaaagttaaaaacaccACAACATATCACACTAAAAAATGGTGTTGTATTAAATTTAGAGTACTATGAGTGTGACCATTGCAACAGAACTTTTAACAGGAAGCGATCATTACGTAGACACATGTATCTGCATCTTGGTATCAAACCATTTCAATGTAAGCATTGCCCTGAGCAGTTCAGAAGTGAATATAATGTGCAGCTTCATGTTGATCGTGTCCACAAATCTATAGTAGATGATCCAGAACTTTATATTTGTAATTTCTGTGAGAAGCCATTTCTTGTTAAAGAAAACTTGAAGAAACATTTAGAAACTCACTCAAAAACTGAGAATTCATTCAAATGCATTTATTGTGACAAAGTGTTTCCCTATCACATCTTATTGATGCAGCATGAGAAGAGACACCTGGTAAAAGGACGCCACCAGTGTACACTTTGCAGTATGTCATACCGTTGCCGCAATCTCCTGTACCTGCATGTTAAAAGCCATTTGAAAATCAAAGATTTTATTTGTCAGTATTGTGGTAAAGAGTTTTTGAGACCAAACTCCCTAAAGCGGCATGTTGAAGTCAGCCACGGTGATCACAGAATTGTGTGTCCAATTTGTAAAAAGAAGTTGAAGGGTCATCTGACTGAGCATATGCGCACGCATGAGAAGAAGCGTCCACATGTGTGTCCTGAGTGTGGCCAGCGGTTTACTCAGTCCACTCAGCTGAACGTCCACCGCCGCGCACACACCGGCGCCAGGCCCTACCCTTGTCGCATCTGCAAACGGTTATTCTCACATTCTAACGCACTAATGTTGCATATCAGACGTCACACAGGAGAGAAACCTTTCCCTTGTGCCATGTGTCCGATGTCCTTCTCTCAATTGCCACACATGAAAACGCACATGCGTAAAATACATGGCAAGGAGAACCCATACAAATGTGCTCACTGTGATACCTTTTACAAGCTCAAAGCTGAGCTTGATTTGCATGAGAAAGCTTGCATAGCAGGAAGTTCTGCTGATCAACCAGCTAAAGGTAAACGGAAAAGGACCAAGAAGGATGAGGACGAGATAGAAGTGGAGTCGTCGATGTCTCTGTCTCGCATGAGGTTCCTGTTGGCCCTTCTCCTCACGATGATCGCTCCCAAAGAGAAACTCAAATACTTAGGCTTCAACAAACGACTCGTAGATGAGATCCTCGTCGAGTCGTTGGAGGCAATGTACCAAACACCATGCAAAGATGAATCTCTTCCGCCAGCCAAGCGTCTAAGGGCAAACATCGAAATGTTCATAAATGGAACAGTTCCCAAGCACCAGATGGAAATTTTCAAGAAGGAAAATAAGTCGACTGAGGATATTCTGGAACTGTTGACTACGGACAAAGATAAGTAA
Protein Sequence: MANVKSRLKAPKSASTKKKNQGPKTKKSSAGPKKSPPKKDDLDSNVVMKRPSTRPVLTPDQKVKFLLKNGHKLRERFIAKPPVNVKKIPEAIVESNPKPAEEPKGSHRKKQASNLPLMSKSGHIKKRKKKCNIKLIDSILKNELMIGDRRKTVNTDAPTTPIVVPPSMDISASRVRVDNNNDIEITDQNNKSKEFDDEVVNLSDLSENSEDSTDNENSSDDLNGKAGANSSKKKKKLKTPQHITLKNGVVLNLEYYECDHCNRTFNRKRSLRRHMYLHLGIKPFQCKHCPEQFRSEYNVQLHVDRVHKSIVDDPELYICNFCEKPFLVKENLKKHLETHSKTENSFKCIYCDKVFPYHILLMQHEKRHLVKGRHQCTLCSMSYRCRNLLYLHVKSHLKIKDFICQYCGKEFLRPNSLKRHVEVSHGDHRIVCPICKKKLKGHLTEHMRTHEKKRPHVCPECGQRFTQSTQLNVHRRAHTGARPYPCRICKRLFSHSNALMLHIRRHTGEKPFPCAMCPMSFSQLPHMKTHMRKIHGKENPYKCAHCDTFYKLKAELDLHEKACIAGSSADQPAKGKRKRTKKDEDEIEVESSMSLSRMRFLLALLLTMIAPKEKLKYLGFNKRLVDEILVESLEAMYQTPCKDESLPPAKRLRANIEMFINGTVPKHQMEIFKKENKSTEDILELLTTDKDK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00952110;
90% Identity: iTF_00888554;
80% Identity: -