Mimp014953.2
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990342.1:32810243-32835550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0059 0.93 11.9 2.9 1 23 310 332 310 332 0.98 2 14 1.4 2.2e+02 4.4 2.1 1 23 339 361 339 361 0.86 3 14 0.00018 0.029 16.6 0.4 2 23 368 389 367 389 0.96 4 14 6.2e-05 0.0098 18.1 3.5 1 23 395 417 395 417 0.98 5 14 0.00041 0.064 15.5 2.1 1 23 423 445 423 445 0.96 6 14 9.2e-06 0.0014 20.7 1.4 1 23 451 473 451 473 0.97 7 14 6.8e-05 0.011 18.0 1.3 1 23 491 513 491 513 0.98 8 14 6.8e-05 0.011 18.0 1.3 1 23 531 553 531 553 0.98 9 14 6.8e-05 0.011 18.0 1.3 1 23 571 593 571 593 0.98 10 14 6.8e-05 0.011 18.0 1.3 1 23 611 633 611 633 0.98 11 14 6.8e-05 0.011 18.0 1.3 1 23 651 673 651 673 0.98 12 14 6.8e-05 0.011 18.0 1.3 1 23 859 881 859 881 0.98 13 14 1.6 2.6e+02 4.2 1.4 1 13 899 911 899 913 0.90 14 14 0.24 37 6.8 3.0 1 23 922 947 922 947 0.84
Sequence Information
- Coding Sequence
- ATGGCAGAAACGAGTACAATGAACTCCGATAATAAAGTGGAGCAGATCGAGAAGAAGGAAGACATGGAGGGCATCAAGACCGAGGTGGAGATGCTGGTAAAGCGCGAGCAGCTGGAGTGCATTGCGTGCACGACGCGCAGCCCAGAGTGTGTGGACATCTACTGCAGCACGACGCGCGTTTCCGGCGCCAAGCTCAGCACCTTCCTGCACAAGTTCACGCAGATCGACCTAGCCGGTCACACTGCCTCCAAGTTCATGTGCAAGACCTGTTATGACCTCATCAATGTGCTCGAACAAGCCGAAATCGAATACTTTAAGTTGAAGGAGGCTTTTGAAAATATTCTTAGCAAGAACCCTCTGTTTGATTCCCAAACCGTGCAGCCCATCAGGCTGACTGACGTGAAGGCAGagttaaatgatgatgatggtgatgatgatgatgatgatgatgactatgtGTGCAACAATGTTGATGATGACGACTCTGATGATGAACCACTCGCCACTCAAAGTAAACGAAAAAGATACAAAGttgagaagaaaaagaaaaaaatacccaCAAATAAACGAAAAGTGAAAAGTAAAGCCAACACTGACAGCTGGAAATGTGAGGAATGTGGATCGAAGGGAGCTGGAGGTGACATAGCCCTGGCGGCTCATATGCTAGCAGTGCACGCCTTAGAGGACCCTTCTGCATTGTTGCCAGAGGTCAAGATTGAGACCTCTGCTGAAGGATCACAAAGCCCCCTATACAACAACGGCTTCAGTAACTGTCTGAAAGTTGAGTTAGAGAACTATGATGAAGATGATGCCAGTTTGGGTGTTGACGACCTTAGCAATGACATGCCCATCAAGAAAAAACTAGGCAGACCGTTAAAGACTAAGATGATACAGCCACAGCCTCGGAAGAAGAAAGCCAAAGTGGTGCACCAGTGTGATCAGTGTGATGCTAAATATACTTCTTTATCCCGCCTAGAGCAGCACAAGCAGAAACACGACGGCTCGAAGCCGCCGTACATCTGCGAGGTGTGCGGCGCGCACTACAAGCACAAGCGTGCCTGCGACATACACATCGCGCTACATAAAGGTATAAGTGACTGGAAATGTGAAGAGTGCAATAAGTTATTCCCATCTAAGAATGCCCTACAGAGGCATAACAACATACACACAGGCAAGCTGAACTATCAGTGCGACCTGTGCGGCAAGTCGTTCATCCACACGTCGTCGTTCAAGATGCACAAGCTGTCGCACTCGGGCGTGAAGCCGCACGCGTGCGACGTTTGCGGCCTGGCGCTCATGACGCGCTCGCACCTCAAGCGTCACAAGCGCGTGCACAGCGGCGAGAAGCGCCACGAGTGCAACGTGTGCGGCAAGAGGTTCTCCGAGAGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCGAGACGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTGAGTTGTCGTGTTGCAGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTGAGTTGTCGTGTTGCAGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCGAGACGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTGAGTTGTCGTGTTGCAGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTGAGTTGTCGTGTTGCAGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGTACAACCTGGCGGCGCACAGCAAGTCGCACGACGCCAGCgagacggcggcggcggcgcgcgagcAGCCGCGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGTCGCACGACGCCAGCGAGACGGCGCCGCCTGTTCCGCTGCACCTTCTGTCCCGAGCGCTTCGAGCGACGGCGACGtTACATGCTAGAGCGCCACATGTCGGTGGTGCACGGCCGCACGCTGGAGCGGCCGCCGCCCACGCCGCGCAACACCATGAGCAAGCTGCTCAAGGCGCAGGCGCAGCGCCGCGACCCCGCCGCGCCCACCACTGGTACTAACACTCTCCGATACTTACGGTCACACACACGACATACAGTTACATGCTAG
- Protein Sequence
- MAETSTMNSDNKVEQIEKKEDMEGIKTEVEMLVKREQLECIACTTRSPECVDIYCSTTRVSGAKLSTFLHKFTQIDLAGHTASKFMCKTCYDLINVLEQAEIEYFKLKEAFENILSKNPLFDSQTVQPIRLTDVKAELNDDDGDDDDDDDDYVCNNVDDDDSDDEPLATQSKRKRYKVEKKKKKIPTNKRKVKSKANTDSWKCEECGSKGAGGDIALAAHMLAVHALEDPSALLPEVKIETSAEGSQSPLYNNGFSNCLKVELENYDEDDASLGVDDLSNDMPIKKKLGRPLKTKMIQPQPRKKKAKVVHQCDQCDAKYTSLSRLEQHKQKHDGSKPPYICEVCGAHYKHKRACDIHIALHKGISDWKCEECNKLFPSKNALQRHNNIHTGKLNYQCDLCGKSFIHTSSFKMHKLSHSGVKPHACDVCGLALMTRSHLKRHKRVHSGEKRHECNVCGKRFSERYNLAAHSKSHDASETAAAAREQPRRRLFRCTFCPERFERRYNLAAHSKSHDASETAAAAREQPRRRLFRCTFCPERFERRYNLAAHSKSHDASETAAAAREQPRRRLFRCTFCPERFERRYNLAAHSKSHDASETAAAAREQPRRRLFRCTFCPERFERRYNLAAHSKSHDASETAAAAREQPRRRLFRCTFCPERFERRYNLAAHSKSHDASETAPPVPLHLLSRALRATVSCRVAGTTWRRTASRTTPARRRRRRASSRGAACSAAPSVPSASSDGELSCCRYNLAAHSKSHDASETAPPVPLHLLSRALRATVSCRVAGTTWRRTASRTTPARRRRRRASSRGAACSAAPSVPSASSDGELSCCRYNLAAHSKSHDASETAAAAREQPRRRLFRCTFCPERFERRYNLAAHSKSHDASETAAAAREQPRRRLFRCTFCPERFERRRTTPARRRRLFRCTFCPERFERRRRYMLERHMSVVHGRTLERPPPTPRNTMSKLLKAQAQRRDPAAPTTGTNTLRYLRSHTRHTVTC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -