Basic Information

Insect: Mythimna impura
Gene Symbol: -
Assembly: GCA_905147345.1
Location: LR990348.1:4380898-4402150[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00089 0.14 14.4 2.4 1 22 294 315 294 318 0.92

2 13 0.0064 1 11.7 2.9 2 23 445 467 444 467 0.93

3 13 0.0079 1.2 11.5 0.1 1 23 473 495 473 495 0.94

4 13 0.039 6.2 9.3 0.1 3 23 512 532 507 532 0.87

5 13 0.03 4.7 9.6 0.1 1 23 544 567 544 567 0.89

6 13 3e-07 4.7e-05 25.4 3.5 1 23 572 594 572 594 0.98

7 13 0.00043 0.068 15.4 0.9 1 23 600 622 600 622 0.95

8 13 0.00014 0.023 16.9 4.9 1 23 628 650 628 650 0.98

9 13 1.4e-07 2.3e-05 26.4 0.4 1 23 656 678 656 678 0.98

10 13 0.0041 0.64 12.4 4.1 1 23 684 706 684 706 0.98

11 13 0.00016 0.025 16.8 0.2 1 22 712 733 712 733 0.95

12 13 8.5e-05 0.013 17.6 0.8 1 23 740 762 740 762 0.98

13 13 7.6e-06 0.0012 20.9 3.6 1 23 768 791 768 791 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00089	0.14	14.4	2.4	1	22	294	315	294	318	0.92
2	13	0.0064	1	11.7	2.9	2	23	445	467	444	467	0.93
3	13	0.0079	1.2	11.5	0.1	1	23	473	495	473	495	0.94
4	13	0.039	6.2	9.3	0.1	3	23	512	532	507	532	0.87
5	13	0.03	4.7	9.6	0.1	1	23	544	567	544	567	0.89
6	13	3e-07	4.7e-05	25.4	3.5	1	23	572	594	572	594	0.98
7	13	0.00043	0.068	15.4	0.9	1	23	600	622	600	622	0.95
8	13	0.00014	0.023	16.9	4.9	1	23	628	650	628	650	0.98
9	13	1.4e-07	2.3e-05	26.4	0.4	1	23	656	678	656	678	0.98
10	13	0.0041	0.64	12.4	4.1	1	23	684	706	684	706	0.98
11	13	0.00016	0.025	16.8	0.2	1	22	712	733	712	733	0.95
12	13	8.5e-05	0.013	17.6	0.8	1	23	740	762	740	762	0.98
13	13	7.6e-06	0.0012	20.9	3.6	1	23	768	791	768	791	0.96

Sequence Information

Coding Sequence: ATGGAAGTAGTTCTTTACAATTCTAATGTTTGCCGATTATGTGGGGAAGAAAATGATAACGGAAATTTGTTATATTCGTGTGAAGAAAATAATCAAAACTTAAGTGAAGTAATTAACACATATTTGCCAATCAAGGTTGCTGATGATGGGCAACTACCTCGTACTATTTGTCCAGGATGCACTATACAGCTGGAAGCCACCGTAGAATTCCTAACACTGATTATAAATGGACAAAGAGTAATACGTGAACTTCATCTTAGAGAGAAGGAATACAACAAGAGAACTGTTCTAACCCCACCTACAGAACAGGAAATTGTAACGGATAAGATAATTTATGAAGTTAATACAAGTGATGGAGTGTACCAAATGGAACACCCAATTTCCTTGCAAGTTGCTGGTCTGGAAAAACCAAAACGCAAGCGCGGCAGACCTCCTAAAAAACCAAAAACTCCAGAGGAGTTGGCAAAGGAAGCTGCTGCAAAGGAGCAGGAGACAAAACGTGCTAAAAGGCAAGAAAGGGAATATGAACCAGCCTCAGGGAAGCGAAGGAGGAAAACTCCAACTCGGTTCCGAGAAGCCGTTCAGGGAAAAGAGCTTGAGAGAATATTCAAAGAAGAAGGAGTAATAGACGGAGAGGAAAGTGAACCTGATGTGAAGCTAGCACCACATCCCGATGTAAAGCCACCTGTGTCTAAGGAACCGGAAGTTATTGGGCATCTAGAGGATTCTGGAGAACTTGTTGTAGTGGTGAAAGGCAAGGGCCGTGGTAGGCCTAAAGGTCCAATGAATCCAACTCGCAAAGAATGCGCTATCTGTGGCATGGAGTTCACATGCACTGGCCGATACATGTCGCACGTAGCCCAGCACGGGCCAGTCCTATACCAGTGTGGGCAGTGTTCTGAGACCTTCACTACTCGATTACACTTTAACAACCATCAGAAGGAACTTGGACATACCGGACAGAATATCATACCATGCAAGAAAAATGTTGAGAGAATTAGGGCGAAGAAAAGTGATAAAGCTAAAGAAACAATAGTGATACCAGATGACCCTCTTTCGCAGACATTGAAGTCTGATAGTGTGGAAATACTAGAAAATGTGATAATACCTATAGCAACCTCATTGCCAGATTTAAATCCTCAGCCAATAGTTATTGACGACAATGTGAATGGGTCTGAGTTCCTGAAGACTGAGAGTCCTACAGTTGAGATTACATCTAGTCCTACAGTTGATATTGTTGTTAAAATTGATGAAATAACCACAGATGGCGCGATAGAGAAGTCTGATGATGTAGAACAAGTAGAAACGACTCCGTCTGGTAAACCAAGATTGAAGTGTAACCACTGCGACAAGACTTTCGGTAGCAAGCAGAGCAAGTCCTTACACATCAAGGCTACACATCAAGGCGAGCGGCCACACGTGTGCGGCGAGTGCGGCGCGCGCTTCGCGTACCCGCGCTCGCTGGCGCTGCACGCCGTCTCGCACCGGCGCCGCGGTGCCGGCAGCACCGCTAAAGGCTACGCCTGTGATCTCTGTGGGAAGTGCGGCGCGCGCTTCGCGTACCCGCGCTCGCTGGCGCTGCACGCCGTCTCGCACCGGCGCCGCGGTGCCGGCAGCACCGCTAAAGGCTACGCCTGTGATCTCTGTGGGAAGGTCCTAAACCACCCGTCCTCCGTGGTATACCACAAAGAAGCTGAGCATGCGGGTCAGCGGTATGTGTGCAACAAATGCGGCAAGTCGTTCAAACACAAGCAACTGTTGCAGCGGCACCAGCTGGTGCACTCGCAGGACAGGCCTTACAACTGTAAGTTATGCAGTGCGTCCTTCAAGACGAAAGCGAACCTACTGAACCACTCGCTCCTACACACGGGCGTCAAGAAGTTCTCGTGTGAGATATGCAAGCACAAGTTCGCGCACAAGACCAGTCTCACGCTGCATATGAGGTGGCATACGGGTCAGAAGCCCTATTCCTGCAACGTGTGCGGCAAGAGCTTTAGTCAGAAAGGCAACCTGTCGGAACACGAGCGCATCCACACCGGAGAGAAGCCCTTCCAGTGCTCGCTGTGCCCGCGCAAGTTCACCACGTCCAGCCAGCACCGCCTGCACGCGCGCCGACACAACTCCGACAGGCCCTTCACTTGCGCGCATTGTGGGAAGAGGTTCGTGTCGCGCGGCTCGTGGGCGGCGCACGTGCGGCGCGAGGGCGGCGGGCGCACGCACCGCTGCGGCGAGTGCGGCCGCACCTTCGCCGAGCGCTGGCCGCTGCTCAAGCATCTGCGCAAGCATTCCGGCGAGCGGCCTTTCCGCTGTCCGCACTGTCCCAGAGCCTTCGCTGACTGCTCCAACCTCAACAAACATAAGAAGCAAGTCCACAAACAGATCAGCTTATTGGCGAACGCCAACCAGCCAGCAGTTCCTACATCCTTACCTCTGAAGGTAGAAAGGCCAGACTCCTCACTCATACAGTTGAACGAACAGGCCGTTGTCCCGGAGACCTCACCAGTGAAACTGTTGGAAGAAGCCACAGAGGACGAGCTAGAGGAGAGAGTCATTTATGTGACGTACGATGTGGATGATGCTGAGTCGCCTGCCTTCCATATACTGGACCCTGAACAGGCCGCTACTCTCGAAGACAACAAGGTGCTCACAACATGCGAGCTGTACTCGGGCCCGTCTCTCCTTGTGCCGCAGCCCGAGTACGAGCAGCTCGAGCTGGAACACGAGCAACTGGAGCTGCAACACGAGCAGCTGGAGCTGCAACATGAGCAGCTGGAACAGGAGGAGCTGCAACATCTGCCTGAGGAGATGGTGCTAGAGAGTCATGACCAGAATATACCTGTAACGGACGAGCAGGGTAATCCGCTACACTTCACCATGCAAGATGGAACACGTCTCGCTATCACGTCTGCCGATGGAAAGTCTTTACaaGTGATAACTCATGATGGTCAAACAATTCCTGTTGAGATTAACGGATACGCAGATGAAGAGGAGGTCGATAACCCAGACACGATAGTCCACCAGCTGAACCTGCAGAAGACCATCGACTCCAACGTGTCTTCTCCGGTCACCCACTACTTTACTATTGTTTAA
Protein Sequence: MEVVLYNSNVCRLCGEENDNGNLLYSCEENNQNLSEVINTYLPIKVADDGQLPRTICPGCTIQLEATVEFLTLIINGQRVIRELHLREKEYNKRTVLTPPTEQEIVTDKIIYEVNTSDGVYQMEHPISLQVAGLEKPKRKRGRPPKKPKTPEELAKEAAAKEQETKRAKRQEREYEPASGKRRRKTPTRFREAVQGKELERIFKEEGVIDGEESEPDVKLAPHPDVKPPVSKEPEVIGHLEDSGELVVVVKGKGRGRPKGPMNPTRKECAICGMEFTCTGRYMSHVAQHGPVLYQCGQCSETFTTRLHFNNHQKELGHTGQNIIPCKKNVERIRAKKSDKAKETIVIPDDPLSQTLKSDSVEILENVIIPIATSLPDLNPQPIVIDDNVNGSEFLKTESPTVEITSSPTVDIVVKIDEITTDGAIEKSDDVEQVETTPSGKPRLKCNHCDKTFGSKQSKSLHIKATHQGERPHVCGECGARFAYPRSLALHAVSHRRRGAGSTAKGYACDLCGKCGARFAYPRSLALHAVSHRRRGAGSTAKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKLCSASFKTKANLLNHSLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCNVCGKSFSQKGNLSEHERIHTGEKPFQCSLCPRKFTTSSQHRLHARRHNSDRPFTCAHCGKRFVSRGSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLANANQPAVPTSLPLKVERPDSSLIQLNEQAVVPETSPVKLLEEATEDELEERVIYVTYDVDDAESPAFHILDPEQAATLEDNKVLTTCELYSGPSLLVPQPEYEQLELEHEQLELQHEQLELQHEQLEQEELQHLPEEMVLESHDQNIPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITHDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKTIDSNVSSPVTHYFTIV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00746034;
90% Identity: iTF_01031338;
80% Identity: -