Basic Information

Insect: Mythimna impura
Gene Symbol: -
Assembly: GCA_905147345.1
Location: LR990349.1:22615995-22621982[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.017 17.3 3.6 2 23 169 190 168 190 0.97

2 12 0.00031 0.049 15.9 1.4 1 23 195 217 195 217 0.98

3 12 0.0011 0.17 14.1 0.3 2 23 239 260 238 260 0.97

4 12 0.00015 0.024 16.9 2.9 2 23 268 289 267 289 0.95

5 12 4.9e-05 0.0077 18.4 0.6 2 23 296 317 295 317 0.96

6 12 3.9e-06 0.00061 21.9 1.6 1 23 323 345 323 345 0.97

7 12 1.6e-06 0.00024 23.1 1.6 1 23 351 373 351 373 0.96

8 12 0.00011 0.018 17.2 0.2 1 23 379 401 379 401 0.95

9 12 0.00011 0.017 17.3 3.6 1 23 407 429 407 429 0.97

10 12 8.6e-06 0.0014 20.8 7.1 1 23 435 457 435 457 0.99

11 12 1.4e-07 2.2e-05 26.4 1.3 1 23 463 485 463 485 0.99

12 12 7e-05 0.011 17.9 1.9 1 23 491 513 491 513 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.017	17.3	3.6	2	23	169	190	168	190	0.97
2	12	0.00031	0.049	15.9	1.4	1	23	195	217	195	217	0.98
3	12	0.0011	0.17	14.1	0.3	2	23	239	260	238	260	0.97
4	12	0.00015	0.024	16.9	2.9	2	23	268	289	267	289	0.95
5	12	4.9e-05	0.0077	18.4	0.6	2	23	296	317	295	317	0.96
6	12	3.9e-06	0.00061	21.9	1.6	1	23	323	345	323	345	0.97
7	12	1.6e-06	0.00024	23.1	1.6	1	23	351	373	351	373	0.96
8	12	0.00011	0.018	17.2	0.2	1	23	379	401	379	401	0.95
9	12	0.00011	0.017	17.3	3.6	1	23	407	429	407	429	0.97
10	12	8.6e-06	0.0014	20.8	7.1	1	23	435	457	435	457	0.99
11	12	1.4e-07	2.2e-05	26.4	1.3	1	23	463	485	463	485	0.99
12	12	7e-05	0.011	17.9	1.9	1	23	491	513	491	513	0.97

Sequence Information

Coding Sequence: ATGAATTTAAATTCCAAAAACTTTGATGAGTGTTGTCGAACTTGTTTACGACATGTTTCCACagaaatgtatgaaatatttcaaaaagGAGCAGATTTAAATATTGCTGAATTGATAACGTTATATACTTCAATACAGGTGGACATGGAGGACAGATTACCAAAGAACATATGCAATAGCTGCTTCAGTTGTTTAATAAACTTTCACGAATTTAAGACCACTGCAGTAAATGCTGACACTGAATTGAGGGAGCATCTTACCCAAATGAatgactataaaaaaaaagtagcaaaaaataataataataatatgcttattgaaattaaaattgaagATGAATATAATCAATATCAAATGGAAAACAATTGCTTAGATGATAGTGTTGATTCTGAAATGGAAGTCAAAGAAGAAATGAACCCATATAATCTAGCACCATTGTACTCTGATATATCAGATGCAAGTCAACGGGAAGAACAGTCAACAAATCGACTGAATATAGAATTAAGATGTGAAGTTTGTAGTAAACAGTTTAAGTCTCAAACAAAACTAAACACTcataaacgaaaacataaacACAAACAATATGTCTGTAACATCTGttcaaaaacttttatgttCAATTATAAATATGTTGAACATTTGCTTACACACAGATCCGATTCCAAAGATAAATCTTACATTACCAAAATTAACCCTGATACAACCCAAAAAATACAATGTGACATTTGTTCAGCAAATTTCAAGTCAATAAACTCTTTAGCTGctcataaaagaaaacatgtaTCAAAAGACAGAGTTTTGTCATGTTCATTGTGTAGCAAAGTATTTAAGAAAATATCCCATCTGAAAAGACATGAATTATCTCATGAAAACAACCGCCCATTGAAATGTTCTGCATGTCCGAAGTCATTCACAACCAAAGCTATGTTAACAGAACACGAAAATAGGCACAATGGAATAAAACCTCATTCCTGTCCGTTATGTCCAAAGGCTTTTGCTCATCTATCTACATTAACAAATCATTTGAAGATCCATACTAGAGGGAAGCCTTACTTATGTCCTACTTGTGGCAAGAGGTTTGATTCAAGCACGAATTTGAACCAGCATACGAAGCGACATTTAGGATTGAAGTTGTTTGCCTGTAACTTGTGTCCTAGAAAGTTTGTCAGTAAAGGTGAACTAAAATCCCATGGCGTAACTCATACTGGTATCAAGTCATATGCATGTGATGAATGTAATGCAACATTCACTAAGTGCAGTTCTTTGAAGAAACACAAGCTGCGGCATCTGGGTATCAAGCCTTTCCAATGTGATACCTGTCATATGAAGTTTTCATCCAAGGACCACCTAAAGCGGCATACTAGAATACACACGGGAGAGAGACCCTACAAGTGCGACCTTTGTGATCGAAGCTTTACACAAAGTGGCGACTTGATGAAACATACGCGCTCACACTTGGGAAATACTCCTTATAAATGCAATCAGTGCAGCCAAAGCTTCAGACTAAAAACAGAACTCCGCACGCATATATCGGAACACTACATTTCTTCACAACTCGAAGCGTTGAAAATGACCAGCACTGACAAACCTCAAGTTATTGATAGTAATGATTCCATAGTAAGGGTACCTCCGGAAACTGGAGTAGTTCAAGCCAGTACTGATAAGAAGATAGAATAA
Protein Sequence: MNLNSKNFDECCRTCLRHVSTEMYEIFQKGADLNIAELITLYTSIQVDMEDRLPKNICNSCFSCLINFHEFKTTAVNADTELREHLTQMNDYKKKVAKNNNNNMLIEIKIEDEYNQYQMENNCLDDSVDSEMEVKEEMNPYNLAPLYSDISDASQREEQSTNRLNIELRCEVCSKQFKSQTKLNTHKRKHKHKQYVCNICSKTFMFNYKYVEHLLTHRSDSKDKSYITKINPDTTQKIQCDICSANFKSINSLAAHKRKHVSKDRVLSCSLCSKVFKKISHLKRHELSHENNRPLKCSACPKSFTTKAMLTEHENRHNGIKPHSCPLCPKAFAHLSTLTNHLKIHTRGKPYLCPTCGKRFDSSTNLNQHTKRHLGLKLFACNLCPRKFVSKGELKSHGVTHTGIKSYACDECNATFTKCSSLKKHKLRHLGIKPFQCDTCHMKFSSKDHLKRHTRIHTGERPYKCDLCDRSFTQSGDLMKHTRSHLGNTPYKCNQCSQSFRLKTELRTHISEHYISSQLEALKMTSTDKPQVIDSNDSIVRVPPETGVVQASTDKKIE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01027569;
90% Identity: iTF_01029483;
80% Identity: -