Mimp050617.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990365.1:10476699-10480279[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.9e-05 0.003 19.7 1.8 1 23 10 32 10 32 0.99 2 18 0.12 19 7.8 0.2 2 23 58 80 57 80 0.93 3 18 0.0001 0.016 17.4 0.5 1 23 132 155 132 155 0.97 4 18 4.7e-05 0.0074 18.5 0.8 2 23 161 183 160 183 0.97 5 18 0.0074 1.2 11.5 0.2 1 23 188 211 188 211 0.91 6 18 2.4e-06 0.00037 22.5 0.4 1 23 218 241 218 241 0.95 7 18 0.0081 1.3 11.4 4.0 2 23 248 269 247 269 0.97 8 18 0.00056 0.088 15.1 2.7 1 23 275 297 275 297 0.98 9 18 0.15 24 7.4 2.9 1 23 347 370 347 370 0.94 10 18 0.23 36 6.9 1.5 3 23 397 418 395 418 0.96 11 18 0.033 5.1 9.5 1.6 2 23 441 463 440 463 0.93 12 18 0.0033 0.52 12.6 0.0 1 23 469 492 469 492 0.94 13 18 0.0045 0.71 12.2 3.8 2 19 498 515 497 520 0.92 14 18 0.0067 1.1 11.7 0.2 2 23 526 548 525 548 0.95 15 18 0.0019 0.3 13.4 1.3 1 23 555 578 555 578 0.97 16 18 0.00088 0.14 14.4 0.3 3 23 586 606 584 606 0.93 17 18 2.2e-05 0.0034 19.5 2.4 1 23 612 634 612 634 0.99 18 18 1.1e-05 0.0018 20.4 0.6 1 23 640 662 640 663 0.95
Sequence Information
- Coding Sequence
- ATGCCATTCAAGTGGTTTCGTAACCGCTACAGGTGTTTCTACTGCGACGAAATCTTTATCGACAGCTCAAAATTAAAAGAACACACCAAAAAACATGACGAAATAAAAATCAACCAAATTCTGCAAAAGATTGGCCGCCATAGCCGTATTAAATGGGACATATCTGAAATATCCTGCAAATTATGTCCCAAATCGATACAAAACTTCGATCAATATTTAAATCACATATCTGAAGCACACGAACTTAAAATTGATCGAGATATCTTTGACAAATGTTGCTACGTATTCAATCTGTCTGATGAGGGCATGCTTTGCATCGAATGCTGTGAGAGTTACAAATTTTTCGCTCCATTACTGAGACATGTCAACAAATTCCATAACAACGCTCGCAAATATGTTTGTGATTACTGTGGCCTAGCTTTCACGTTGAAAGGGACGATAACACACCATATAAGAAATGTACATTCCGGTGTAACTACGACTTGCAAATACTGCGGTCAAAACTACCCAAGCAAAGCTAGCTTAGCGAACCACTACAGAAAATCTCATAAAACTGGAAAATTCCTTTGCGATTTATGTCCTAAAGCATTCGAAAGTAGATATTTGAAAAGAAATCATATAGCTTTAGATCATAACGTGAAGTGTTTACAGTTTCCTTGCGAGAAATGTCCTAAAATATTTACTCGTAAAAGTACACTTTTGAAACACGTTTCTATAGTTCATTTGAAGGAGAAATTTACGACGTGCCATCTTTGTGGGCATAAAGGATACGATATGCAGGCTCTAAGACGTCACATGAAGACGCACGATCCTACTAAACATTTCAAATGCCCGCATTGTGACCAGAGGTTTCGTATGGAGAAGACTTTTGTTGCTCATGTGAGCAAGCATAAGGAAACTGAGGAGGAGTATATCCTTGACTACAAAAATACTGCAGATAGACTAGCAGAGAAACAACGGAAAGATGATCTAACGAGATTTCTCACCATCATCATAGAAAACTCTTCAATACTCCCGTTCAGATGGTCAGCAAACAAATACATGTGTTTCTATTGCTGCTGTGCCTTCGTCGATAGCGCAAACCTTAGAGAACACACATTAGAAGAACACAAAGGCGCGAATCTGAAAAGTGTCCTTAGAACCCTCGTAGGAAGCAGTCGAGTTAAGTTAGACACTTCACAAATGATCTGCAAGAAATGCGGGAATCAATTCCATGTTTTCGACGAATTTTTGACCCATTTAATAACAACACACGAATTCAAATTCGACATAGAAATAGCCAAATGTATCTTTGCTTTTAACTTGTCTGATGATGGAATGTCTTGTTACGAATGCGGCAAAGAGTTTAGATTCTTCGGTCCGTTACTGAAACACGCTCATAAATTCCATAATAAGTATAAGACATTCCTTTGCGAGATTTGCGGACAAGGTTTCGTTGCTCAAGCAAACGTTATTAGCCACATAAAAAACGTCCACTCACTCTCAGGACTACACTGCCAGAAATGCGACCAAGTGTTCAGAAACTACTACAATTTACAAACACACTGCGAACAAGTTCACAAAAAGGAAATGCTGAAATGCCCGAAGTGTCCCGAAATTCTGACGTCGCAATACTTGAAGAAGCGGCACTTGGCGATGGTGCATGATATAAAAAAACTCCAATTCAGCTGTAACCAATGCGAGCAGGTCTATACGATGAAGAGCCGGCTCGTGCAGCACCAATTACGGACCCATATGAAACAGAAAACCCTTGCTTGTGAGGTTTGTGGGTTTAAAGTCTTCAATAACGATATGTTGAAGCGCCACATGGTCCGCCATGACGATTCGAGGCCGTACGAGTGCAAGTTTTGTCAGAAGACCTTTCAAAGGAAGAAGACTTTGGACATTCATATAAGGATACACACGAATGATAAGAGGTATGCGTGTAAGGAGTGTGGAAGGGCGTTCGTTCAGGTGACCAGTTGGAAGTTGCATATGAGGGTGCACCATGGAACCGAAGGGGCGGTTTGGCAGTGA
- Protein Sequence
- MPFKWFRNRYRCFYCDEIFIDSSKLKEHTKKHDEIKINQILQKIGRHSRIKWDISEISCKLCPKSIQNFDQYLNHISEAHELKIDRDIFDKCCYVFNLSDEGMLCIECCESYKFFAPLLRHVNKFHNNARKYVCDYCGLAFTLKGTITHHIRNVHSGVTTTCKYCGQNYPSKASLANHYRKSHKTGKFLCDLCPKAFESRYLKRNHIALDHNVKCLQFPCEKCPKIFTRKSTLLKHVSIVHLKEKFTTCHLCGHKGYDMQALRRHMKTHDPTKHFKCPHCDQRFRMEKTFVAHVSKHKETEEEYILDYKNTADRLAEKQRKDDLTRFLTIIIENSSILPFRWSANKYMCFYCCCAFVDSANLREHTLEEHKGANLKSVLRTLVGSSRVKLDTSQMICKKCGNQFHVFDEFLTHLITTHEFKFDIEIAKCIFAFNLSDDGMSCYECGKEFRFFGPLLKHAHKFHNKYKTFLCEICGQGFVAQANVISHIKNVHSLSGLHCQKCDQVFRNYYNLQTHCEQVHKKEMLKCPKCPEILTSQYLKKRHLAMVHDIKKLQFSCNQCEQVYTMKSRLVQHQLRTHMKQKTLACEVCGFKVFNNDMLKRHMVRHDDSRPYECKFCQKTFQRKKTLDIHIRIHTNDKRYACKECGRAFVQVTSWKLHMRVHHGTEGAVWQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026582;
- 90% Identity
- iTF_01026582;
- 80% Identity
- iTF_01026582;