Mimp029620.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna impura
Gene Symbol
-
Assembly
GCA_905147345.1
Location
LR990352.1:16078444-16089669[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00012 0.019 17.1 0.1 3 23 135 155 134 155 0.97
2 19 1.1e-06 0.00018 23.6 1.2 1 23 161 183 161 183 0.99
3 19 7e-06 0.0011 21.1 2.7 1 23 189 211 189 211 0.99
4 19 4.6e-06 0.00073 21.6 2.6 1 23 226 248 226 248 0.98
5 19 0.0002 0.032 16.5 0.6 1 23 263 285 263 285 0.98
6 19 6.4e-05 0.01 18.0 3.1 1 23 300 322 300 322 0.98
7 19 4.3e-07 6.8e-05 24.9 1.4 1 23 337 359 337 359 0.99
8 19 0.0002 0.031 16.5 2.8 1 23 365 387 365 387 0.98
9 19 0.00023 0.036 16.3 0.0 1 23 394 416 394 416 0.97
10 19 1.4e-05 0.0022 20.1 2.1 1 23 422 444 422 444 0.99
11 19 0.045 7.1 9.1 1.8 1 23 451 473 451 473 0.98
12 19 7.5e-07 0.00012 24.1 2.3 1 23 479 501 479 501 0.99
13 19 0.052 8.2 8.9 1.8 1 23 508 530 508 530 0.98
14 19 3.1e-06 0.00048 22.2 1.5 1 23 536 558 536 558 0.99
15 19 0.00059 0.092 15.0 0.7 1 23 565 587 565 587 0.99
16 19 3.4e-06 0.00053 22.0 1.9 1 23 593 615 593 615 0.98
17 19 0.0025 0.39 13.0 0.3 1 20 621 640 621 643 0.93
18 19 4.1e-05 0.0064 18.6 1.3 2 23 650 671 649 671 0.96
19 19 3.7e-06 0.00059 21.9 1.3 1 23 677 700 677 700 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCATCCCCACGTACACTCCGGTCCCCCAACAATAATACGGTCAGATTCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAGACACACCAAGAGGATTCTAAAGACAGCCTCATAGTACAACATCAAGTACAACACCAGCAAGATCTCATGGAACAACATCAACAACAACAAGAAATGCAGCAACAAGACGACGAGCTGAGTTTCAAAGGAATGGAAGATGAAGGAGTTGACATGGACATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCAGTTCAAACTAAAATGGAAGTGTCAAATGGGGGTCAATCGACGCCACGATCTAAACCTCAGGCCTGTAAGgTCTGTGGCAAAGTTCTGTCGTCGGCCTCTTCTTACTATGTCCACATGAAGCTTCACTCAGGAAATAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTTTGCCGTAAGCCGTACCTAGAAGTGCACATGCGCACACACACAGGGGAGCGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGATTCACGCAGAAGTCCAGTCTCAACACGCACAAACGTGTTCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGACCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGACCCTATCAATGCGAGATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACACACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAACGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACGTGCAAGCAGTACTTGGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAATGTATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCTTACGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAAAGCTATGTAACAGCGCACAGATGGTCTCACGTGGCCGACAAGCCGTTGAACTGCGACCGTTGCTCCATGTCGTTCACGTCCAAGTCGCAATTCGCGCTGCACATCCGCACACACTCTACCGGCTCATGTTACGAGTGTAGTGTCTGCGGACGCTCCTTCGTTAGGGACAGCTATCTAATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCGAACAGCATCGGCACCATCAACAGCGTCGCGACAAACACCAACAACTCCAACAATAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTTCCCATGGTGAACCGTTACATGACATCTCAAGGGACCCAAGTGTCTATGCAGGATACCAGTAAAATGTCTGCGATGTCGCCACAGTCTATCGCGTCTATATCGTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHSGPPTIIRSDSSHASIINMNQHHQTHQEDSKDSLIVQHQVQHQQDLMEQHQQQQEMQQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCEICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01085626;
80% Identity
iTF_01031322;