Basic Information

Insect: Mythimna impura
Gene Symbol: RAB2A
Assembly: GCA_905147345.1
Location: LR990358.1:12267552-12287137[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.3e-07 4.6e-05 24.8 0.0 3 35 169 203 168 209 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.3e-07	4.6e-05	24.8	0.0	3	35	169	203	168	209	0.86

Sequence Information

Coding Sequence: ATGGCATACGCCTACTTGTTCAAATACATCATCATCGGCGACACAGGTGTAGGCAAGTCATGCTTACTACTCCAGTTCACCGACAAAAGATTCCAGCCTGTTCACGATCTCACAATTGGTGTAGAGTTTGGTGCTCGCATGATCACTATTGATGGCAAGCAAATCAAACTGCAGATATGGGACACTGCTGGACAGGAAGCTTTCAGATCAATCACCCGATCATACTACAGGGGCGCGGCGGGCGCACTGCTAGTGTACGACATCACGCGGCGGGACACATTCAACCACCTCACCACCTGGCTCGAAGACGCGCGCCAGCATTCTAACTCAAACATGGTCATCATGTTGATTGGTAACAAGAGTGATTTGGAATCCCGACGTGAAGTCAAGAAGGAGGAAGGTGAGGCGTTCGCCCGTGAACACGGCCTAGTCTTCATGGAGACCTCGGCGAAGACTGCAGCCAACGTGGAGGAGGCCTTCATCAACACTGCCAAAGAGATCTATGAGAAAATACAGGAAGGAGTATTCGATATCAACAACGAGGGGAGTTGTTCGATTCGTCAAGCAGCAAAAAAATTCGGCGTACCTCGAAGCAGTATCCAGTTCAAAATACGAAATCCGAACACAAAATTTAAGTCTGGACCTGATCCAGTGCTTACCGAAGGTGAAGAAAATGAGTTgtgtaactttattatacaaCAAGCTAAAAGAGGATTTCccagaaagaaagaagataTACAGGTTTGTGTCCAggattttttgaagaaaaatccAAGACCTAATCCATTCCGGAATAACAAACCTGGAGATGTATGGTTCAAGGCATTCTTGAAACGTCATCCCAACATCTCGATTCGGACATCAGAGGGAGTCACTAACGCAAGTGCCTGTGTTTCGGAATTAGATATTAGGAAATGGTTccaagaaataaaacaatacattGACGATGAAGGTTTATCTCCTGTCATTCAAGACCCTGCCCGTGTGTTTAATGCTGACGAAAGTGGCTTTAATATTTGTCCAAAAACCGGCAAAGTTTTGGCAGAAAAAGGATGCAGAAATGTGTACGAAATTGAAAAATCATCTGCTAAGGAAAACATAACAGTGTTATTCACATTTTCTGCCGCCGGTCAAGTGTGCAATCCCATGATCATTTATCCCTACAAAAGAATCCCCGACCGAGTTACGTTGAGTGTGCCATCTGGATGGGGAATTGGCCGCAGCGACTCGGGCTGGATGACGGCTGCGGTCTTTTATGATTATATAGCTAACTGCTTCCACCAAGAACTAACGCAAAATAATATTCCTTTTCCAgtaattttgtttgttgatGGCCACAAAACGCATATAACATTAGAAGTATCTGAACTCTGCAGAACCTTACAAATCCATTTAATTGCACTCTACCCGAATGCAACGCGTATTTTGCAACCAGCAGATGTTGCAGCTTTTCGTCCGATAAAAGCTGGATGGAAAAAGATGTTGCGGGATTGGTACATTGCATGTAATTATCAAGAATCTCTCAACAAAGAATCTTTTGCTCCTTTACTAAAAAAAGTTGTAGATTCATGcgcaaaaaaagaaactttgatAAATGGATTTAGGGTAACTGGCCTATACCCATTTGAAGCCGACAATGTTGACTACAGCAAGTgcttatcaattaaaaaacctgaaaatGATGCACCTACAATTATGAACACAACAAATGCTGAATGTGTACTGACTTACTCCGATTTTTGTGAGATTGTAGGTGAATCAATAATTCTCAAATGTCACACAGTTACATCATTAACGCAAGTAGATGTTGATGACAACTTTACAGCAATTTATAAACTTTGGCAGAAATTTAAAGCTGTTCCCGAAGAATTTATGTTTAGACAGGATTGGAATCAAAGTGTACACACTGATGAAAATGACTTGTTAACCAAAAGTAGCTGTGTAATAGATTTGAAGGAACCAAGCGAAGAAAGCAAAATGATTCTAAATGAATATACCGGTGAACTAACAATAAACAACGAAGATAATAAAAATGAGACACAGAACATACAAGTGGAAGAAAATAAAGGGGGTAGTCACCAGAAAATACTAACACATTTTCCAGATGTCTGTACTCCATTACCTATAACTACGATACCAACCCAAATAGAGATTCACGAACCAGACAGTTTTACCGACGACACTAGTAGTTTACAGCCTACCACATCAAAAGAAATAGAGATGCTAATATCAAACACTATAATAGAACCGCAACCTAGCACTTCGAAACAGATTAATCCAAATAAAACTGTTTCTGTTGTCTCAAATATACCTTTCTCGGAATATCTGAAACAAAAGTTACCCGATTTTCCCAAACGACAAGGAAAACGCCAAATTAACAGAAATCCATTCGCGTTGACATCTGACCTATATGTTGAAAAGATAAgagaaaaacaattaaaaaagcaAGAAGAAGATGCTGCAAAAGAAGAAAGGAAGAGATTAAGAGAagagaaaaaaagtcaaaaagagaATAATGTACCAAATAAGAAAccaaagaatataaaaaataagactgCTACTAGCAAAACGATAAATAGTCAAGATGAGTCTAAGAAACTgttagaaaataagaaaaaacgaTGTGTCGCTTGTTGTGACTATTGTTTAAATCCAATAACAAGAAGGGCGATTCTATGTAGTCTCTGTAATAAACAATTTCATGAGAATTGTATACCATTACCTCACAAGATTCATATTCCTGAGGATGAATGTGATTCTTTTTTGTGCCATAATTGTTACAAAGAGAGTAACTCtacatctgatgatgatgatgatgatgtaattaatttatttaaacttgtcAATAACTACAAATGA
Protein Sequence: MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLVFMETSAKTAANVEEAFINTAKEIYEKIQEGVFDINNEGSCSIRQAAKKFGVPRSSIQFKIRNPNTKFKSGPDPVLTEGEENELCNFIIQQAKRGFPRKKEDIQVCVQDFLKKNPRPNPFRNNKPGDVWFKAFLKRHPNISIRTSEGVTNASACVSELDIRKWFQEIKQYIDDEGLSPVIQDPARVFNADESGFNICPKTGKVLAEKGCRNVYEIEKSSAKENITVLFTFSAAGQVCNPMIIYPYKRIPDRVTLSVPSGWGIGRSDSGWMTAAVFYDYIANCFHQELTQNNIPFPVILFVDGHKTHITLEVSELCRTLQIHLIALYPNATRILQPADVAAFRPIKAGWKKMLRDWYIACNYQESLNKESFAPLLKKVVDSCAKKETLINGFRVTGLYPFEADNVDYSKCLSIKKPENDAPTIMNTTNAECVLTYSDFCEIVGESIILKCHTVTSLTQVDVDDNFTAIYKLWQKFKAVPEEFMFRQDWNQSVHTDENDLLTKSSCVIDLKEPSEESKMILNEYTGELTINNEDNKNETQNIQVEENKGGSHQKILTHFPDVCTPLPITTIPTQIEIHEPDSFTDDTSSLQPTTSKEIEMLISNTIIEPQPSTSKQINPNKTVSVVSNIPFSEYLKQKLPDFPKRQGKRQINRNPFALTSDLYVEKIREKQLKKQEEDAAKEERKRLREEKKSQKENNVPNKKPKNIKNKTATSKTINSQDESKKLLENKKKRCVACCDYCLNPITRRAILCSLCNKQFHENCIPLPHKIHIPEDECDSFLCHNCYKESNSTSDDDDDDVINLFKLVNNYK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01026099; iTF_01026100;
90% Identity: iTF_00850681;
80% Identity: -