Mimp050515.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990365.1:9589083-9590690[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-10 3.1e-07 31.8 0.0 1 36 18 53 18 58 0.92
Sequence Information
- Coding Sequence
- ATGCCAAACGATGCAAATGATGGTCAAACGAGGCAAAAGAAGGGCGCCTGGGATCCGGAAAATATGCGTAAAGCTGTAGAAAAGGTACTGAATAACGAGATGAGTGCACGTATGGCCGCAGAACGCTATCAGGTACCCCGAACTACGCTGAATGACAGAATTAGtgctattaaaaataatgcagAGATGTCCATTGAACCAGTTATGGGTCGTTTTcacaatactttttatcctgaacatGAAGAAATATTGGTGACACATATCAAAGATCTGGCCAATAGGCTAATGCTTTTAAACAAACAAGAATTTTTACGTCTTGCTTTTCAACTGGCAGAAAAATTAAAGTTACCTCACcaatttaataagaaaaaaagatcTGCAGGGAAAAACTTCTATTATTCGTTCATGAAAAGACATAGTGACTTATCGTTGCGAAGTGCTGAATCCACGAGTTTAATGAGAGCAGTAGGATTTAACAGACCTCAGGTTGAGCGTTTCTTTGTATGTCTTGAGACTTTGATGCAGAAGTTTAAATTCACTCCCTATAAAATATGGAATTGTGATGAGACTGGTGTCAGCATTGTGCAAAAGCATGCTAAAGTAATAGCGATTAAAAACCAAAAACAAGTTGGAAAGCTTACGTCAGCAGAACGTGGAAAGAATGTAACAGTGCTTTTTGCAATGAGCGCTGGAGGTCAGTTCGTACCACCTTTCTTCGTATTTCCACGGGCCCGAATGAATGAAAGACTTATGATCAATGCTCCAAATGAGAGTGTAGGTGAAGCTCAACCAAACGGCTGGATGAATGCcgaattatttttgaaatggaTGCATCACTTTGTGAAATATTCTAACCCTACAGTCGAGAACCCAGTTCTCTTGATTCTGGATGGACATGCCAGTCATAAAGACTTAGATGTTATTGAATTTgctaggaaaaataatattcatatgcTGAGCACTCCACCTCACACAACCCACAAATTACAGCCTCTAGATCGAACGTTCATGAAACCATTTAAATCAGCTTATAATGATGCATGTGACTTGTGGATGAGGTCAAATCCTGCTGTTAGAATCAGTGAATACGAGATTGCAGGGTTTGTTGCGAGTGCATTTAATCGAGTATCGCGTACGGAAATCGCAGTTAATGGCTTTCGCTGCACAGGCATACACCCCTTTGATAAGAACATCTTTAGTGATTTGGATTTCGTTGATTCTCTCATGACTGATGTTACAGAAAATCAATCAACATCAGAACCATTGCTTTCTCCTTCTTATTTGTCAGACCCAACTCCTTCAACATCTGCTCAATCATCAATTCTGCCGAATTTTAAACCTCGGCAGCAGGAAGCAGCAACAGGAACGACAACTTTACCCTCTCAACAACTTGAATCTCCGACTCCTGCCTCCGATTTTGTCGCCCAAAGTACAACTTGTGTGCAACCCGACTTTAGAGCTGCACTTTTAGAGGCCTCGCCAATTCCTGATGCTTCTAAAACAAGAGCTACTGCACGACGTCGAAAAACTGAAAGAAGTGAAATTATAACGAATTCTCCATACAAAAAGATGCTGGAAGagaaaaaaattgacaaaaaaaaaacttga
- Protein Sequence
- MPNDANDGQTRQKKGAWDPENMRKAVEKVLNNEMSARMAAERYQVPRTTLNDRISAIKNNAEMSIEPVMGRFHNTFYPEHEEILVTHIKDLANRLMLLNKQEFLRLAFQLAEKLKLPHQFNKKKRSAGKNFYYSFMKRHSDLSLRSAESTSLMRAVGFNRPQVERFFVCLETLMQKFKFTPYKIWNCDETGVSIVQKHAKVIAIKNQKQVGKLTSAERGKNVTVLFAMSAGGQFVPPFFVFPRARMNERLMINAPNESVGEAQPNGWMNAELFLKWMHHFVKYSNPTVENPVLLILDGHASHKDLDVIEFARKNNIHMLSTPPHTTHKLQPLDRTFMKPFKSAYNDACDLWMRSNPAVRISEYEIAGFVASAFNRVSRTEIAVNGFRCTGIHPFDKNIFSDLDFVDSLMTDVTENQSTSEPLLSPSYLSDPTPSTSAQSSILPNFKPRQQEAATGTTTLPSQQLESPTPASDFVAQSTTCVQPDFRAALLEASPIPDASKTRATARRRKTERSEIITNSPYKKMLEEKKIDKKKT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01429863;
- 90% Identity
- iTF_01029190;
- 80% Identity
- -