Mimp040833.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna impura
Gene Symbol
CFDP2
Assembly
GCA_905147345.1
Location
LR990359.1:23790620-23805238[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.9e-10 3e-07 31.8 0.2 4 43 631 669 628 670 0.93

Sequence Information

Coding Sequence
ATGAAAACACGgacacgaattgctttttggaATGTACGTACGCTTACCGGCGACAGTCGACTAGCCCAAGCTGAAGCAGTGATGATTAATTACAACCTGCAAATTCTCGGTCTAAGCGAAGTGAGGAGAAATGGTTTTGGCGACATGAGAACGTCCGGGGGCTTGACTTTGCTGTATTCGGGCAAAGAAAGTGAGGAAGATGTGCATGAGTATGGCGTGGGACTCCTCCTTTCTAATGCAGCAAGGAAAAGCCTTGTGGACTGGAAACCAATTTCAGACCGGATCATGTACGCCCGTTTTAGCTCAAGAGCCCGGAAGATTTCTATCGTACAGTGTTACGCCCCAACCAATGCATCATCGGAGGATACCAAAGATGACTTCTATAATGCCCTTAACGCCACCCTTAGAGGCATAAAAAAGCAAGACATCGTCTTCGTCATGGGGGACCTAAATGCAAAGGTTGGGAAGATAAACACTAACCGCGAGCGGCATATGGGTACGCAGGGACTTGGAGTATGCAACGAGAACGGCGAACGATTTATGGAGTTTTGTCAGAACCACGACTTGACCATCGGAGGTACATTATTTATCCATGGCGACCACCATAAGTACACGTGGAACTCACCCGATGGAGTCACCAAAAATCAAATTGACCACCTTGCCATTAGTTCCAAGTGGCGTTCTTCATTGCTCGATGTCCGTAACCGCAGGGGCGCCGATATTGATAGCGACCACCATCTGGTTGTTGCTGAAGTCCGGCTTAAAATTGCAGTGGCCCGTAAAGTTGGAGGACTGGGTAAAATAGGAAGAAGGTTCGATGTGAGCAAATTGTATGACTCCGACATCCGAAAAGCTTTTCAACTCGAGTTACGCAATCGTTTTTCGGTACTCGAAGCTGCTACGGACTCACTGGACGAGGAGTGGAACCGTATCAAAGTGGCCTATACAGAGACCAGCGCCGTTGTTTTGGGACACAAATCGAACAATTCTCGCGAAGACTGGATGTCACAGCGTACGTGGAGCCTGATTGAAGACAGACGAAACCTTCATCTGAGACTGCTTGAGACACATAATGATACCGTAAGAACCGACCTTAATATGCAGTACCGCCAAAAGCGCAAGGAAATTTATCGCAGCACCCGCAAAGATAGGAGACGGTGGGCTGATGGTATTGCGGATCGTGCCCAACAAGCTGCGAACTCCGGTAACCTAAGGGAGTTATATAACGCTACCAAAACCTTGACAGGAAACAATAAGTCAAAAAAGAAGCCACTGAAGTCCAAAGATGGTCAGCTCATTGTGACGTCAGAAAAGCAGCTGCTTCGCTGGCGTCAACACTTTGAAGAGGTCTTCCGTCCATCCGCCGCATTGACCCCGGACTCATTGCAGACTGTATCTCCACCAGCCCGGTTGCTCGACATCGATACGGAACCACCATCAGCCTCTGAAGTTGCTAAAGCAGTCCACTCTTTGAAGGCAGGTAAAGCGCCAGGACTTGACCTGATTACGGCGGAAATGCTACAAGCTGACATATCCTCTGCCGTCGATGTTCTGACGCCCCTTATTGAAAAGATCTGGACCGCCGAAGAGCTCCCGGACGAATGGAACAAAGGTCTTTTAATCACTGTACCCAAGAAAGGTGATCTTAGTCAGTGCAATAACTGGAGAGGTATTACATTGCTCTCAATTCCCTCAAAAGTGTTCTGCAGGATTATCTTGGATAGGTTGTCTAGGGCCGTGGATCCTCTCCTACGCAAGGAGCAGGCTGGTTTCCGCTCTGACCGCTCGTGCACGGACCAGATCAACACTCTTCGTATCATACTTGAGCAGGCAGCAGAATGGCAGAGGGAGATTTATCTGACTTTTCTAGCCATGACTGACAAACAGAAGGCCATATTAAAGGCCATGGAGGCAGTTAGAAAAGGAGCCTCAATTTCAGCTGCAGCCAGGCAGTACAATATTCCACGGTCAACGTTGGACGACAAAATACGCGGCCGCTATTCTGTTGAATGTTCCAAAGGACCTGCTACAGTTTTgtcaaaagaagaagaagatcattTAAGAAGATGGTTAATTTTTATGGCAGATAGTGGTTTTCCTATAACTAAGGCGCAATTGTTGGATAGTGTaagtttacttattaaaaaattgaaGCGAGAAAACCCTTTTAAAAATGGCAGACCAGGTCGTCACTGGTTTGAAGCCTTCATAAAGCGGCACCCTGAAGTAGGCCAGCGAGTGGCCCAAAATCTGACGCAAACCCGTGCTTTAGTTCAGGAAAGCAGTTTAAGAGCGTGGTTTAAAGAAGTGGAAGACTATTTTATTATGGCACACCTCGAAGAAGCAATTAAAGATCCAAGAAGGATATTTAACTGTGATGAAAGCGCTTTCTTCTTATCACCAACAAATAACAGAGTTTTAGCAAAACGAGGTgccaaaaatgtttataatattattcccaGTAGTGAAAAAGAGTGCGTGACAGTCTTAGTCACGGCAAATGCAGCAGGTGAATTGGCACCTCCAATGGTGTTTAAActgaaatcaataccatttaaaatttcaaaaactgCACCAAAGGACTGGGGCTTAGGATTCACGCCAAAAGGTTGGATGACAGGAGaatcttttaattaa
Protein Sequence
MKTRTRIAFWNVRTLTGDSRLAQAEAVMINYNLQILGLSEVRRNGFGDMRTSGGLTLLYSGKESEEDVHEYGVGLLLSNAARKSLVDWKPISDRIMYARFSSRARKISIVQCYAPTNASSEDTKDDFYNALNATLRGIKKQDIVFVMGDLNAKVGKINTNRERHMGTQGLGVCNENGERFMEFCQNHDLTIGGTLFIHGDHHKYTWNSPDGVTKNQIDHLAISSKWRSSLLDVRNRRGADIDSDHHLVVAEVRLKIAVARKVGGLGKIGRRFDVSKLYDSDIRKAFQLELRNRFSVLEAATDSLDEEWNRIKVAYTETSAVVLGHKSNNSREDWMSQRTWSLIEDRRNLHLRLLETHNDTVRTDLNMQYRQKRKEIYRSTRKDRRRWADGIADRAQQAANSGNLRELYNATKTLTGNNKSKKKPLKSKDGQLIVTSEKQLLRWRQHFEEVFRPSAALTPDSLQTVSPPARLLDIDTEPPSASEVAKAVHSLKAGKAPGLDLITAEMLQADISSAVDVLTPLIEKIWTAEELPDEWNKGLLITVPKKGDLSQCNNWRGITLLSIPSKVFCRIILDRLSRAVDPLLRKEQAGFRSDRSCTDQINTLRIILEQAAEWQREIYLTFLAMTDKQKAILKAMEAVRKGASISAAARQYNIPRSTLDDKIRGRYSVECSKGPATVLSKEEEDHLRRWLIFMADSGFPITKAQLLDSVSLLIKKLKRENPFKNGRPGRHWFEAFIKRHPEVGQRVAQNLTQTRALVQESSLRAWFKEVEDYFIMAHLEEAIKDPRRIFNCDESAFFLSPTNNRVLAKRGAKNVYNIIPSSEKECVTVLVTANAAGELAPPMVFKLKSIPFKISKTAPKDWGLGFTPKGWMTGESFN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-