Mimp016332.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- clz9
- Assembly
- GCA_905147345.1
- Location
- LR990343.1:27335074-27336362[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-11 1.9e-08 35.7 0.1 4 42 7 44 4 46 0.93
Sequence Information
- Coding Sequence
- ATGACTGACAAACAGAAGGCCATATTAAAGGCCATAGAGGCAGTTAGAAAAGGAGCCTCAATTTCAGCTGCAGCCAGGCAGTACAATATTCCACGGTCAACGTTGGACGACAAAATACGCGGCCGCTATTCTATTGAATGTTCCAAAGGACCTGCTACAGTTTTGTCAAAAGAAGAAGATCATTTAAGAAGATGGTTAATTTTTATGGCAGATAGTGGTTTTCCTGTAACTAAGGCGCAATTGTTGGATAGCGTaagtttacttattaaaaaattgaaGCGAGAAAACCCTTTTAAAAATGGCAGACCAGGTCGTCACTGGTTTGAAGCCTTCATAAAGCGGCACCCTGAAGTAGGCCAGCGAGTGGCCCAAAATCTGACGCAAACCCGTGCTTTAGTTCAGGAAAGCAGTTTAAGTGCGTGGTTTAAAGAAGTGCAAGACTATTTTATTATGGCACACCTTGAAGAAGCAATTAAAGATCCAAGAAGGATATTTAACTGTGATGAAAGCACTTTCTTTTTGTCACCAACAAATAACAGAGTTTTAGCAAAACGAGGTGTCAAAAATGTTTATAACATTATTCCCAGTAGTGAAAAAGAGTGCGTGACAGTCTTAGTCACGGCAAATGCAGCACGTGAATTGGCACCTCCAATGGTGTTGTTTAAActgaaatcaataccatttaaaatttcaaaaactgCACCAAAGGACTGGGGCTTAGGATTCACGCCAAAAGGTTGGATGACAGGAGAATCATTTTATGAGTACATGACCAATGTCTTCTATCCTTGGATAGAAAAAACTGATATTACTGttagattgcATGGACTTTGCTCACATACGACCCTGCCACTAAGTAATTTCTGTCGGGATAAAAACTTCCAACTGATCGCATTATATCATAATGCGACTCATTTAATACAACCAATGGATGTGGCTGTTTTTCGGCCTCTTAAGATGCTATGGAAGAAAGCAGTTTATGAGTGGCGAAATGACAACCACTTTGCTAAACTTCGCAAAGAACATTTTTGCCCGCTGCTACATAAATCTCTTATGCAATTGGACCCTAACTCGATCAAAAATGGATTTCGCAAATGTGGGTTGTCACCTTTTGATGCAAACAACGTCGATTATTCCAAGTGTGTAACAAGTCATCCCAAGAAACCAGCCAAAGCATATAATGACAGCCAAATACCCAGAAGTATATAA
- Protein Sequence
- MTDKQKAILKAIEAVRKGASISAAARQYNIPRSTLDDKIRGRYSIECSKGPATVLSKEEDHLRRWLIFMADSGFPVTKAQLLDSVSLLIKKLKRENPFKNGRPGRHWFEAFIKRHPEVGQRVAQNLTQTRALVQESSLSAWFKEVQDYFIMAHLEEAIKDPRRIFNCDESTFFLSPTNNRVLAKRGVKNVYNIIPSSEKECVTVLVTANAARELAPPMVLFKLKSIPFKISKTAPKDWGLGFTPKGWMTGESFYEYMTNVFYPWIEKTDITVRLHGLCSHTTLPLSNFCRDKNFQLIALYHNATHLIQPMDVAVFRPLKMLWKKAVYEWRNDNHFAKLRKEHFCPLLHKSLMQLDPNSIKNGFRKCGLSPFDANNVDYSKCVTSHPKKPAKAYNDSQIPRSI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00147295;
- 90% Identity
- -
- 80% Identity
- -