Mimp035870.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- clz9
- Assembly
- GCA_905147345.1
- Location
- LR990356.1:17293229-17294821[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-11 1.1e-08 36.4 0.0 1 41 25 65 25 67 0.96
Sequence Information
- Coding Sequence
- ATGGTTCGAAAATATACAAGAACATTTAGAAACTTGAGAAATGGTAAACGTTTCATGCCGTACTTCTCCTATACTCGTGATGATTTGAACAAGGCATTATCAGACGTTAAATCTAAAAGACTGTCTACCAGAGAAGCGGAACAGAAATATGGCGTCCCCAAAAGTACAATCAACCGTCATTTAAAAGAGAAAAACTTATTGTATTCAAAACCAGGGCACCCTGCATTATTTTCAGAGGTGGAAGAAAAAATATTCGTCGATTATATTAAACATATGGGAGAATGGGGATTCCCCTTAGATCTAATAGATTTGAGGGTCTTcgcccaaaaatatttacaaaaaataggaAAGACTGTCTATAATCTGAAAGACAATTTACCGGGACGGGATTGGGCGGTTTCTTTTTTACAAAGGCATAAAGAACAGATTTCTAACAGATATGCTGCAAATATATCCTCGGACAGAGCAACCTTAAGCTCAGAAGTGCTTGACGCATTCTTTGACCATTACGAACAAAATTTGGAAGATGTCCCACCTgattgtttaataaattatgaCGAGACTAACCTGACAGACGACCCTGGATCCAAAAAGTACATTTTTAAGCGAGGAAAAAAGTACCCTGAGAGGATCATTAACAATTCTAAATCGTCTGTGAGTCTGATGTTTTCTGGCACAGCATCAGGACTACTTTTACCAGTATATGTTGTATACAAAGCAGAGCACTTGTACGACACGTGGGTCTTAGGAGGCCCAGAACACACAAGATACAATAAATCCAAAAGCGGATGGTTTGATTCGCTATGTTTTGAGAATTGGTTCCAGACGATCATCATTCCATATGTAAAAACGAAAGAGGGAAAAAAGGTTGTGCTTATAGGAGATAATCTATCGTCACATTTCTCGTCTAAAGTATTGGAAGATtgtgaaaaattcaatataacTTTTGTGTGCTTACCACCAAAGGCCACACACATTCTGCAGCCTCTTGATGTTGCCTTTTTCGCTCCTTTGAAACATTATTGGCGAATTATTTTGACAAATTGGAAAAAAGGCGATGGCCGGAAATGCAAAACTCTTGCTAAAAATAGCTTTCCTAGCCTTTTAagtgaattattaaaaatgctGCATGCAGAAGATACCGCTTCACAAAATCTCAAGTCTGGTTTTGCCAAATGTGGTCTGCTGCCTGTTGACAGAAATAGACCGAAAGAAAGACTTCCTGGGCAAATATCGGATGTGGATATAATACAAAACAGGGCTTCTGGTGTTATTATAGAGATGTTAGAAGAAATAAGGGGTTGTACTGGTGAAACAAAAAGTACGAGGAAGAAACGCTGCAATGTTCCTGCCGGCCAAAGCATAACATTAGCTGATTTAAACACTGAAGAACGGAGCAACAAAGAGAAGGGAAAGGGTAAAGGAAAAGGGAAAAAAACACGACCTGTGACACCTACATCGACTATTTTACCGATAATAGAAAATTTTACTGGGCTATCCTGTGAGGTACAAGACCAACAAAAATTGAGCAACAAAGGGAAAGGTAAgggcaaagaaaataaaaaaaccatcaGCAACAGAAAAAGTTCTTAA
- Protein Sequence
- MVRKYTRTFRNLRNGKRFMPYFSYTRDDLNKALSDVKSKRLSTREAEQKYGVPKSTINRHLKEKNLLYSKPGHPALFSEVEEKIFVDYIKHMGEWGFPLDLIDLRVFAQKYLQKIGKTVYNLKDNLPGRDWAVSFLQRHKEQISNRYAANISSDRATLSSEVLDAFFDHYEQNLEDVPPDCLINYDETNLTDDPGSKKYIFKRGKKYPERIINNSKSSVSLMFSGTASGLLLPVYVVYKAEHLYDTWVLGGPEHTRYNKSKSGWFDSLCFENWFQTIIIPYVKTKEGKKVVLIGDNLSSHFSSKVLEDCEKFNITFVCLPPKATHILQPLDVAFFAPLKHYWRIILTNWKKGDGRKCKTLAKNSFPSLLSELLKMLHAEDTASQNLKSGFAKCGLLPVDRNRPKERLPGQISDVDIIQNRASGVIIEMLEEIRGCTGETKSTRKKRCNVPAGQSITLADLNTEERSNKEKGKGKGKGKKTRPVTPTSTILPIIENFTGLSCEVQDQQKLSNKGKGKGKENKKTISNRKSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00924537;
- 90% Identity
- -
- 80% Identity
- -