Mimp012103.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990341.1:26513189-26518695[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-06 0.0021 19.5 0.0 2 39 16 52 15 55 0.94 2 2 3.8e-07 0.00013 23.4 0.0 3 35 522 555 520 561 0.88
Sequence Information
- Coding Sequence
- ATGCCGAGAATTTATATACGCAAAACTAATCGCCAAAATTGGCCTGAAGAACAAATGCAAAAGGCATTAGATGCCGTCAGAGATGGTATGCCTTACAAAACCGCAAGTAGAGAGTTTAAGGTCCCTGTGATGACATTAAAAAGAAGAGccaaaggactacgggtttcggGTTACGGGTTAGGCCGTAAGCAGGTGGCGCGAGTGACTTCAGCTGAGAGAGGTGACACAACGACCGCAGTGATTTGTACCTCAGCTTCTGGAACTTTTGTTCCTCCAATGTTAATCTTCCGCAGAGTCAGGATGAAAATAGAATTGATGGATGGCGCACCTCCAGGCGCTATATGTGCATGCAATCCATCTGGTTGGATGAAATTAGATGTGTTTTCTCAGTGGTTCGATCACTTCTTAAGTCATGCCAAACCGACAGCAGAAGATCCGGCTCTTTTGATATTGGATGGTCACCTATCTCACACAAAAAATTTGAATGTGGTATTAAAAGCCAGGGATAATCACGTCACTATTCTATGCCTGCCGCCTCATTGCACCCACAAACTCCAACCCTTGGACGTTGGAGTCATGTATCCGCTAAGCGTTTATCATAACCAAGCGTTGGAGAAGTGGATGAATAACAATCCTGGAAGAGTGGTAAACGTGTTCCAAATAACGAAAATTTTTACAGAGGCCTATCTAAAAGCAGCAGTTCCACTGAATAGTATGAATGGATTCAACAAAACAGGAATATATCCGTTCAACCCTGAAATTTTCTCTAATGTGGACTTCATTGCAGCTGAAACGACTGAAATGGATGTTGATAGTGACACGATCGAACCTCCCATTTCGATCCTTGGGACGTCAAGTCCTCCATTAGCAGAAACCGAGCAAGTACCTTCTCCTCAAGCGAGTAATCCAGAAACTGAAACACTACAGCCTTTACAAGTGGATGTCCAAGAATCCCTTCATTTAACACCTCAGCTGTCTCCAATTGAAACTTCGACTCCAATGGTGCCTCAAAAATCTCCACAAGCACCACAATCATCCTGGCAAGCACCGTCCTTCCCAAAAAATACCTCAACGTCTGAATCTTCTGAAAGATTACCTCCAGCTTTGGCTGTTGGTCTTCCATCCACGTCTTTTGGTGTTGTTACACCCAGAGAAGTACGACCAATACCAAAGATAGTCGGAAAAAGAGCGAGTGCAAGACGAATAAGAGTAGACACATCAGTACTGACCAGCACACCTTACAAAAAATACCTTGAAGAGGAAGCTAAAAAGAAAACAGACATGGAACAAAAGAAAGCCCTTAAGGaagcgaataaaataaaaaaaacggtaaCCAACAAACAGAACGATAAAGGAAAAGGTGGTGGGAAAGGAAAAGGAGTCGGGAAAGGAAAAGGAGGCGGAAagggaaaaggaaaaaaaaaggaaaacagaTCAGACTCTTCTGAAGGGGAGAGTGATACCGAATGCCTCTTCTGTACTGAAAGCTACTCCAAAGACAATAAAGGCGAAGGGTGGATTAGATTTTCTGAAATGTCGTTAAAAAAACGCCAATACTCTAAAGAGGCAATAGAAAATGCtattaaatttattgaaaacGATGAAGGTTCGATTCGTCAAGCAGCAAAAAAATTCGGCGTACCTCGAAGCAGTATCCAGTTCAAAATACGAAATCCGAACACAAAATTTAAGTCTGGACCTGATCCAGTGCTTACCGAAGGTGAAGAAAATGAGTTgtgtaactttattatacaaCAAGCTAAAAGAGGATTTCccagaaagaaagaagataTACAGGTTTGTGTCCAggattttttgaagaaaaatccAAGACCTAATCCATTCCGGAATAACAAACCTGGAGATGTATGGTTCAAGGCATTCTTGAAACGTCATCCCAACATCTCGATTCGGACATCAGAGGGAGTCACTAACGCAAGTGCCTGTGTTTCGGAATTAGATATTAGGAAATGGTTccaagaaataaaacaatacattGACGATGAAGGTTTATCTCCTGTCATTCAAGACCCTGCCCGTGTGTTTAATGCTGACGAAAGTGGCTTTAATATTTGTCCAAAAACCGGCAAAGTTTTGGCAGAAAAAGGATGCAGAAATGTGTACGAAATTGAAAAATCATCTGCTAAGGAAAACATAACAGTGTTATTCACATTTTCTGCCGCCGGTCAAGTGTGCAATCCCATGATCATTTATCCCTACAAAAGAATCCCCGACCGAGTTACGTTGAGTGTGCCATCTGGATGGGGAATTGGCCGCAGCGACTCGGGCTGGATGACGGCTGCGGTCTTTTATGATTATATAGCTAACTGCTTCCACCAAGAACTAACGCAAAATAATATTCCTTTTCCAgtaattttgtttgttgatGGCCACAAAACGCATATAACATTAGAAGTATCTGAACTCTGCAGAACCTTACAAATCCATTTAATTGCACTCTACCCGAATGCAACGCGTATTTTGCAACCAGCAGATGTTGCAGCTTTTCGTCCGATAAAAGCTGGATGGAAAAAGATGTTGCGGGATTGGTACATTGCATGTAATTATCAAGAATCTCTCAACAAAGAATCTTTTGCTCCTTTACTAAAAAAAGTTGTAGATTCATGcgcaaaaaaagaaactttgatAAATGGATTTAGGGTAACTGGCCTATACCCATTTGAAGCCGACAATGTTGACTACAGCAAGTgcttatcaattaaaaaacctgaaaatGATGCACCTACAATTATGAACACAACAGATGCTGAATGTGTACTGACTTACTCCGATTTTTGTGAGATTGTAGGTGAATCAATAATTCTCAAATGTCACACAGTTACATCATTAACGCAAGTAGATGTTGATGACAACTTTACAGCAATTTATAAACTTTGGCAGAAATTTAAAGCTGTTCCCGAAGAATTTATGTTTAGACAGGATTGGAATCAAAGTGTACACACTGATGAAAATGACTTGTTAACCAAAAGTAGCTGTGTAATAGATTTGAAGGAACCAAGCGAAGAAAGCAAAATGATTCTAAATGAATATACCGGTGAACTAACAATAAACAACGAAGATAATAAAAATGAGACACAGAATATACAAGTGGAAGAAAATAAAGGGGGTAGTCACCAGAAAATACTAACACATTTTCCAGATGTCTGTACTCCATTACCTATAACTACGATACCAACCCAAATAGAGATTCACGAACCAGACAGTTTTACCGACGACACTAGTAGTTTACAGCCTACCACATCAAAAGAAATAGAGATGCTAATATCAAACACTATAATAGAACCGCAACCTAGCACTTCGAAACAGATTAATCCAAATAAAACTGTTTCTGTTGTCTCAAATATACCTTTCTCGGAATATCTGAAACAAAAGTTACCCGATTTTCCCAAACGACAAGGAAAACGCCAAATTAACAGAAATCCATTCGCGTTGACATCTGACCTATATGTTGAAAAGATAAgagaaaaacaattaaaaaagcaAGAAGAAGATGCTGCAAAAGAAGAAAGGAAGAGATTAAGAGAagagaaaaaaagtcaaaaagagaATAATGTACCAAATAAGAAAccaaagaatataaaaaataagactgCTTACTAG
- Protein Sequence
- MPRIYIRKTNRQNWPEEQMQKALDAVRDGMPYKTASREFKVPVMTLKRRAKGLRVSGYGLGRKQVARVTSAERGDTTTAVICTSASGTFVPPMLIFRRVRMKIELMDGAPPGAICACNPSGWMKLDVFSQWFDHFLSHAKPTAEDPALLILDGHLSHTKNLNVVLKARDNHVTILCLPPHCTHKLQPLDVGVMYPLSVYHNQALEKWMNNNPGRVVNVFQITKIFTEAYLKAAVPLNSMNGFNKTGIYPFNPEIFSNVDFIAAETTEMDVDSDTIEPPISILGTSSPPLAETEQVPSPQASNPETETLQPLQVDVQESLHLTPQLSPIETSTPMVPQKSPQAPQSSWQAPSFPKNTSTSESSERLPPALAVGLPSTSFGVVTPREVRPIPKIVGKRASARRIRVDTSVLTSTPYKKYLEEEAKKKTDMEQKKALKEANKIKKTVTNKQNDKGKGGGKGKGVGKGKGGGKGKGKKKENRSDSSEGESDTECLFCTESYSKDNKGEGWIRFSEMSLKKRQYSKEAIENAIKFIENDEGSIRQAAKKFGVPRSSIQFKIRNPNTKFKSGPDPVLTEGEENELCNFIIQQAKRGFPRKKEDIQVCVQDFLKKNPRPNPFRNNKPGDVWFKAFLKRHPNISIRTSEGVTNASACVSELDIRKWFQEIKQYIDDEGLSPVIQDPARVFNADESGFNICPKTGKVLAEKGCRNVYEIEKSSAKENITVLFTFSAAGQVCNPMIIYPYKRIPDRVTLSVPSGWGIGRSDSGWMTAAVFYDYIANCFHQELTQNNIPFPVILFVDGHKTHITLEVSELCRTLQIHLIALYPNATRILQPADVAAFRPIKAGWKKMLRDWYIACNYQESLNKESFAPLLKKVVDSCAKKETLINGFRVTGLYPFEADNVDYSKCLSIKKPENDAPTIMNTTDAECVLTYSDFCEIVGESIILKCHTVTSLTQVDVDDNFTAIYKLWQKFKAVPEEFMFRQDWNQSVHTDENDLLTKSSCVIDLKEPSEESKMILNEYTGELTINNEDNKNETQNIQVEENKGGSHQKILTHFPDVCTPLPITTIPTQIEIHEPDSFTDDTSSLQPTTSKEIEMLISNTIIEPQPSTSKQINPNKTVSVVSNIPFSEYLKQKLPDFPKRQGKRQINRNPFALTSDLYVEKIREKQLKKQEEDAAKEERKRLREEKKSQKENNVPNKKPKNIKNKTAY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -