Mlon018487.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756427.1:30003157-30006938[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.11 11 8.0 0.3 1 23 178 201 178 201 0.95 2 8 0.00057 0.058 15.1 2.4 1 23 207 229 207 229 0.98 3 8 0.01 1.1 11.1 3.6 1 23 233 256 233 256 0.97 4 8 0.00016 0.016 16.8 1.6 1 23 262 284 262 284 0.92 5 8 0.0077 0.77 11.6 1.3 1 23 290 314 290 314 0.82 6 8 1.9e-05 0.002 19.7 4.6 1 23 320 342 320 342 0.98 7 8 0.00044 0.045 15.5 6.2 1 23 348 370 348 370 0.98 8 8 0.00068 0.068 14.9 0.3 1 23 376 399 376 399 0.94
Sequence Information
- Coding Sequence
- ATGTctgaaaaaattatagaaatgtttaCTTTTTGTACCTCTATAAAGgtgtTAAAAGAAGATGAATTGCCTTTAAATATATGTCATCAATGTCTAGAAAATATTCAAACGTGTTACAGTTTTATCAATATCTGTAAATCAACTGATGAAGCTCTTAGACAATATTTGCAACAAATCAAAGAAAGAGAAGAAGcaaagaaagaggaagatgttaaAACTGAAGTGTTTGTCAAAGATGAACCTTCTATTTTAGATGACGATGATAGAAATGATGCTGATGATGACTTTGATCAATCTGATAGAGATAGTAGTGATAATGAGAAAATAGTTGACATAAAGAACAAACTAAAAGAATTCCCATCGAATAGTGTTAAGAAGAAAATATCGAACAATGAAGATGAACAAATTAGCAACGAAATTACTATTAAAAAGAAatcgaaaagaaaagaaatggtGAATGGTAAATTAGTTCGTGTTGCAATTCCAGAATCAAATTCAGGAGACAATAGCAAATTTAGATACAGGAAATCGTATACATGTAACAAATGTTCCGAAGTCATAATAGGTTTAAACGCGTACAACAGACATAAGCGTGATATGCATTTAGAATATAAAGTCTACACCTGTGATGCCTGCAATAAAACATTCGAAAGGCACAGAAGTATGGTATCTCATTTGAAAGTTCACGACCGCCCTTACAAATGCAAATTGTGTTCTGATGATTTTAAGCGCAAAGATAAGTTAAAATTACATGTTATAATGTGCCACACTACAGAGAAACCTTTCCAATGTTCTCTGTGTCCTTTAAGTTTTAAAACTAAAGAGTATTTAAAAATCCATAATTTCTTACATGAACACGATAAAAGATATTTATGTGAATACTGCGGAGCTAGTTTCAATTCAGCACAAAGTggtacattaaaaatacacattcgaACCCacacaggtgaaaaaccatataaCTGTAAAGAGTGCCCTAAGAAGTTTCGTACTATACATCAGTTGTACAAACATGAGAGGACACACGCTAATTTAAGGACTTACAAATGCTCGTTTTGTCACAAAGGATTTAATCATCGTTCCAGTATGACAGTTCATGAACGTCTGCATACTGGCGAAAGACCTTACAAATGTGAATACTGTCCAAGAGCCTTTATAGACAACTGGAAGAGAAAATCACATCTTGTTTCTGCTCACAATATCCCTAGGGAAAATATTCACTGTGGAACTCCAGGGAAGAAGAGCAAATATTACGTTGCCGAGGACAAACGAGACGAAGACAAATAA
- Protein Sequence
- MSEKIIEMFTFCTSIKVLKEDELPLNICHQCLENIQTCYSFINICKSTDEALRQYLQQIKEREEAKKEEDVKTEVFVKDEPSILDDDDRNDADDDFDQSDRDSSDNEKIVDIKNKLKEFPSNSVKKKISNNEDEQISNEITIKKKSKRKEMVNGKLVRVAIPESNSGDNSKFRYRKSYTCNKCSEVIIGLNAYNRHKRDMHLEYKVYTCDACNKTFERHRSMVSHLKVHDRPYKCKLCSDDFKRKDKLKLHVIMCHTTEKPFQCSLCPLSFKTKEYLKIHNFLHEHDKRYLCEYCGASFNSAQSGTLKIHIRTHTGEKPYNCKECPKKFRTIHQLYKHERTHANLRTYKCSFCHKGFNHRSSMTVHERLHTGERPYKCEYCPRAFIDNWKRKSHLVSAHNIPRENIHCGTPGKKSKYYVAEDKRDEDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -