Mlon012071.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- ZEB2_1
- Assembly
- GCA_963576905.1
- Location
- OY756424.1:37203153-37205642[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.082 8.3 8.3 0.5 2 23 413 434 412 434 0.96 2 12 0.26 26 6.7 2.3 3 23 442 463 441 463 0.97 3 12 0.022 2.2 10.1 0.3 1 23 468 490 468 490 0.97 4 12 1.9e-06 0.00019 22.9 2.5 3 23 497 517 497 517 0.99 5 12 2e-05 0.002 19.7 0.4 1 23 523 546 523 546 0.94 6 12 1.7 1.7e+02 4.2 5.9 2 23 553 575 552 576 0.94 7 12 0.027 2.7 9.9 0.9 1 23 598 620 598 620 0.97 8 12 8.2e-06 0.00083 20.9 0.2 2 23 626 647 625 647 0.97 9 12 0.00065 0.066 14.9 0.2 1 23 653 677 653 677 0.96 10 12 2.1 2.1e+02 3.9 7.3 2 23 684 705 683 705 0.97 11 12 0.02 2.1 10.2 5.1 1 23 711 733 711 733 0.98 12 12 0.49 49 5.9 0.5 1 23 740 762 740 762 0.97
Sequence Information
- Coding Sequence
- ATGGAATCAAAAAATATGGATAGTGTAAAGGGTGTTGTTCGAATAACTTATAAATTAGTTAAGAAAGTTGAAGATGTTTACCTGGACAAACAAAACGACTCACTACAGAAGACTTGTAAAAATATAGACCAGAAATCGCTTCAAAATGTCGAATTAAAAGAAGACGAAGAAGTTGAGGATGAAGATGATCTTCCACTAATTATGGTAAACATGAGATCAAAAACCAACGCCTGTGATAATAGTGATAATATAGCCGTCGTCCAACCACGAAAAGCAATCAAGAAAAGCAACCTGGCAAACAGCAGTGAACAAAAGGTTGCAGTTACAAAATTGAAGAAAGAAGACGAGTTAGGTGTAAAAGTAAAGCCGGCTTACTGTAAAATATGTTTCATCAAGACTCAGAATGAGGAGGAGGCGCTCCAACACGAACACTCTCACAACACCTTTCGGAATGCTAATGGGAGGTGGACGTGCATCGTGTGTAGTGATCAGTTTCCATACTACTGTGATTTGTTAAACCATTTTCTAAACCATCGCGATATATTAGAGCTGTACAGTGTTTATCTGAGTAACCTGGATATGTCACTCGTCAACAAGCACCAGGCTGACAGCAGTGAAGAAGCCGACCACTTGGAAAGTGACTTTAAAGACGACTTGGATTACTTTGAATATACAGATGGTAAAAAGCAAGATGGgtcttgtgtagataataaAGAGAAGCAAATTGAGAATCATCCGGAGGAAGAAATAAAAACCAGAAAAGAAGATGGTAAAAAAGACGAGATTGATCCAAATTGTATTGTTCCCAAAATAGAACCAAATGAAGAATCAGATTCCGTACAAAATGCATTTGGAAACTTTGGTGATTCAGATCCAACAGGATTCTTTAGGGAAGTAGATGTGGTCAAATTAGAATCGGGTTTCGCAGTAAAGAAGGAGTTGCTTGACAATGACAATGTGTTTATGAATGACGATGATAATGCGTTCATGAATGACGATGTGTTTGATGATGGGTTTAACGATGATTCTGATGAAGACAAACCATTAAGCAAATGCATAGTTAAAAagcataaaaagaaaaagaagaaaaatgactcagatttttatacaaagaaaaaaagtaagaaaagaaaaaagaataaagtGTACACGGAAGATGCTTGTGACAGAGAAGCTGCACAGAAAAGTGCTTCAGAAGAGGGGCATATCCCCTATTCCAAGTTTTATAGGACGCAGAAGTGTAAGAATTGTGAGTTTGAGTCGTCCAAAAAGGCAGAAATGGAAAACCACATGGCTGAGCATGTTGAAGGGGAACCtgttttatgtgaaatgtgTGATTTTAGGTGCAAAATAGAAAGACAATTATATAGGCACAAAAGGATCGTACACGAGGGCTACAAATATATGTGTGACTCGTGCGATTTCACATCCAAAACTCTTGGCAACATGCGGGGGCATATGGTGGTGCATGGTGACCGTAAAATAGGGTGTAATTTGTGTGGTAAAATGTTCAGGCGTAAGAACAATTTGAATGATCATTTGAAAACTCATACTAACACTCGTCCTTTCAAATGTTCCGAGTGTCCCAAAACATTCAAGGATCCAAAAGGTTACAAGATGCATTTACTGGGGGCACACAACATAGTCCAGCGTCTAACTTGTGATTACTGCAACTTCCAGACGGACCACAGGCACGAGTTGAACATGCACAAAGCCCGCATGCATCATTCAAAGTACATGCGCTTATTCTCTGCTGAAGATGTTACAGGAGAAACTGTTGATACAATAATATACGCCTGCAATATGTGCAAATATTTTGGCCACACGGAAGCCAATTTGAAAAGCCATCTGATAGTTCACAATGAAAAGAGAATATCTTGCGAGGTTTGCGGGAAACTATTCAGGCGCTTAGGGAATTTACTGGAACACCAACGCTCCCACAGCGAACACCGTCCGTATGCATGCCCCGTTTGTCCTGCCAAGGCTTTCAAAGATAACAAGTCCTATCGCAGACACATTGCCCGGCAACACGACTTGCTGGATATGATCAAATGTCATTTGTGCGATTACAAAACACACACCCAGGGTCTGATGAGATACCACCACATGAAACACAGTGGGCAGTTGAGGTTCAGATGCAATGATTGTTCTTATTCCTGTATGACCAGGAAGACCATGCAGAGACACAAGCTAGTGCACAAGGACGTGTTACCAGTTTTTACTTGTGACTTGTGTGATTTTCAGTCTGTTTCTGATAGAGCTGTTAAGAGACATAAACAGATACACacagaaaaataa
- Protein Sequence
- MESKNMDSVKGVVRITYKLVKKVEDVYLDKQNDSLQKTCKNIDQKSLQNVELKEDEEVEDEDDLPLIMVNMRSKTNACDNSDNIAVVQPRKAIKKSNLANSSEQKVAVTKLKKEDELGVKVKPAYCKICFIKTQNEEEALQHEHSHNTFRNANGRWTCIVCSDQFPYYCDLLNHFLNHRDILELYSVYLSNLDMSLVNKHQADSSEEADHLESDFKDDLDYFEYTDGKKQDGSCVDNKEKQIENHPEEEIKTRKEDGKKDEIDPNCIVPKIEPNEESDSVQNAFGNFGDSDPTGFFREVDVVKLESGFAVKKELLDNDNVFMNDDDNAFMNDDVFDDGFNDDSDEDKPLSKCIVKKHKKKKKKNDSDFYTKKKSKKRKKNKVYTEDACDREAAQKSASEEGHIPYSKFYRTQKCKNCEFESSKKAEMENHMAEHVEGEPVLCEMCDFRCKIERQLYRHKRIVHEGYKYMCDSCDFTSKTLGNMRGHMVVHGDRKIGCNLCGKMFRRKNNLNDHLKTHTNTRPFKCSECPKTFKDPKGYKMHLLGAHNIVQRLTCDYCNFQTDHRHELNMHKARMHHSKYMRLFSAEDVTGETVDTIIYACNMCKYFGHTEANLKSHLIVHNEKRISCEVCGKLFRRLGNLLEHQRSHSEHRPYACPVCPAKAFKDNKSYRRHIARQHDLLDMIKCHLCDYKTHTQGLMRYHHMKHSGQLRFRCNDCSYSCMTRKTMQRHKLVHKDVLPVFTCDLCDFQSVSDRAVKRHKQIHTEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -