Mlon016155.1
Basic Information
- Insect
- Mystacides longicornis
- Gene Symbol
- -
- Assembly
- GCA_963576905.1
- Location
- OY756426.1:30717046-30727404[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00026 0.027 16.2 1.8 1 23 182 204 182 204 0.98 2 12 1.7 1.7e+02 4.2 1.9 1 23 211 235 211 235 0.91 3 12 0.00061 0.062 15.0 0.8 3 23 242 262 241 262 0.98 4 12 0.0038 0.39 12.5 5.8 1 23 268 290 268 290 0.97 5 12 5e-06 0.00051 21.6 1.0 3 23 298 318 296 318 0.97 6 12 0.71 72 5.4 3.7 2 23 513 534 512 534 0.94 7 12 0.56 57 5.7 1.7 1 20 548 567 548 570 0.88 8 12 0.002 0.2 13.4 3.3 2 23 584 605 583 605 0.95 9 12 9.4e-05 0.0095 17.6 3.2 1 23 614 636 614 636 0.97 10 12 0.47 47 5.9 1.0 1 12 642 653 642 656 0.89 11 12 1.5e-05 0.0015 20.1 3.3 1 23 667 689 667 689 0.99 12 12 0.5 51 5.8 0.0 2 19 697 716 696 717 0.90
Sequence Information
- Coding Sequence
- ATGAAGTTAAGCCATATTTGCAGAATATGTTTGAAAGAAGGAGATCTATCCTCaatattcgaaattcaaaaaacttatggaaaacagaccatttcTTGTTCAGATATGCTGAATATATGCACAGCATATGAAGTAAAACCATCCGATGGTCATCCTCAACAGCTTTGCAGCAGTTGTCTCAGTAAGCTTTGGGCTGCTTACAAATTTCGTCGTCTGTGTGAAGAATCTTATGAACACATAACCAGTTATATTTTAGAGATTAAGATAAATTCCAATTCGAATAATGAATTTCATATTAaatcagaagaaaatattaacatttccATTGGAGGTTTGCAAGGAAAGGATGATCTACCTATTCTAGATTTCCACCAACCTGTGAATGATAGTaaagatgacataaaaacaGAGGACTCATTGGATTTTTACAGTAATGAAtatgattttgaaaatgatgATGCAAGTGACAATTTTCAAGATGAGAGAGTTTTCAATTCAAAGGCAGCTCACAACGCCTGTTCGAAGGATAAATCCGACTCTCTGTACCAATGTGATCATTGTGggaaatcatacaaaataagGCTGTCGCTTGTTTATCATTTGGAAACACACAATGTCAGAAAGAAGAAATATATTTGCAAAAAAGAAGGTTGTGGTAAATTGTTTTATACCATCTGCGGTATAAATAGGCATAAGTATTTACACGAAAATCAGAAAGCAATCTGTCACATATGCAGTAAGGAGTTGGCAGATAAAGCATCGCTGAAACTTCACGTAAGAAGGCACTCAAATCAAAGGAATCATCCTTGTTCTTACTGTGATAGAAAGTTCTATACATCCAGTCACAGGTTGGAGCATGAAAGAAGACATAACAATGTGAGAAATTATGGGTGTAAGCTGTGTGATAAACGATTTGTATCTTCAACCAACTTGAAAAAACACCTACTGATACACGAGGGCGCATTTAATGAACATTGTAGGATGAAGTTTGATGTTGTTTGTAGGATTTGCCTGAAAGAAGGTCAGATGCAGTCAATTTTCGATACCTTCAAAACGGAGGGAGATCGTAAAGTTTACTGTTCAGAAATGCTTCACACTTTGATAACTTTTAAGGTTGATCCTTCAGACGGATACCCTGAGCAGCTCTGTAAACATTGTATCAACAAATTATGGTCCGCCTACAAGTTTCAGCGTCTTTGTGTATCTTCGTACGAATACCTGACTAATTATATGTTGGATAATAAACCTATTATTAAGTTAGAATCTAATGAAGATGATTGCCCGCTGATTGATTTCGTGGCCCGCTGTGAAGAAACAGAACAAGATAAAGATACCATTGTGGCATCTTACATCAAAGTTGAAATGCATCCCGGCTCAgataataaagatgatattcCAGATATGCTTAATAATATGGATGATTATGATTGCAATGATGCTGAAGAAACTCTAAATATGGATAATGAACTTAGTTCTGAGAAGGCtgagaagaaaaaaaaaAAGTACAAAAAGGATGGTAAATTTGTAAAAAGACTTGTTTGTCCTCGCTGTTGCAAAAAATTCCGGAATAAATTGTCATATTTGAGACATGAGGACAAACACAAGCTGTCGGATTATCCCGAAATAGGAAACCAGAAAAACCACGAATGCTCCGAATGCGGGGTGAAATTTTACTTTAAAGAAATCTTATCGAAacatgaaaaatgtcacaaagtAAGATCTAAACAGTACTCACTTCGGGAAGAGAAACCGTGCACACATTGCTCGAgaaaattcaaaaacaatttgagTTTATTGAAGCACATCGATCAACATTTGGGAGTCAGCTCGGAAGATAAGTTTAAGTGTACGTATTGTTCTAAAACGTTCAAGGAGaagagtttatttttaaaacacgaAGCTTCTCATTTGGGACTGAAGCCGTATTATTGTGAAACTTGTAAGAAATCTTATCGTTCCGAGGTGGACCATAAGGCATATTGCGGCTTAGAACTAACATTTAAATGTGATTACTGTGCGAAATTTTTTAAGACTAAATCTAGATTGATAAGTCATATGACAACACATAACAGCAACAGAAAGAAACTTGTATGTGACCAAGAGGGATGTAATAAAGAGTTCATATCACAAGCTGGCATTATGAAACACAAGTAA
- Protein Sequence
- MKLSHICRICLKEGDLSSIFEIQKTYGKQTISCSDMLNICTAYEVKPSDGHPQQLCSSCLSKLWAAYKFRRLCEESYEHITSYILEIKINSNSNNEFHIKSEENINISIGGLQGKDDLPILDFHQPVNDSKDDIKTEDSLDFYSNEYDFENDDASDNFQDERVFNSKAAHNACSKDKSDSLYQCDHCGKSYKIRLSLVYHLETHNVRKKKYICKKEGCGKLFYTICGINRHKYLHENQKAICHICSKELADKASLKLHVRRHSNQRNHPCSYCDRKFYTSSHRLEHERRHNNVRNYGCKLCDKRFVSSTNLKKHLLIHEGAFNEHCRMKFDVVCRICLKEGQMQSIFDTFKTEGDRKVYCSEMLHTLITFKVDPSDGYPEQLCKHCINKLWSAYKFQRLCVSSYEYLTNYMLDNKPIIKLESNEDDCPLIDFVARCEETEQDKDTIVASYIKVEMHPGSDNKDDIPDMLNNMDDYDCNDAEETLNMDNELSSEKAEKKKKKYKKDGKFVKRLVCPRCCKKFRNKLSYLRHEDKHKLSDYPEIGNQKNHECSECGVKFYFKEILSKHEKCHKVRSKQYSLREEKPCTHCSRKFKNNLSLLKHIDQHLGVSSEDKFKCTYCSKTFKEKSLFLKHEASHLGLKPYYCETCKKSYRSEVDHKAYCGLELTFKCDYCAKFFKTKSRLISHMTTHNSNRKKLVCDQEGCNKEFISQAGIMKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -