Basic Information

Insect: Mystacides longicornis
Gene Symbol: -
Assembly: GCA_963576905.1
Location: OY756427.1:29635617-29639655[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00089 0.09 14.5 0.3 2 23 258 279 257 279 0.97

2 8 1.7e-06 0.00017 23.1 0.0 1 23 283 305 283 305 0.98

3 8 0.34 34 6.4 0.2 2 23 310 330 309 330 0.94

4 8 0.0093 0.94 11.3 1.7 1 23 337 360 337 360 0.96

5 8 1.9e-05 0.0019 19.8 0.2 1 23 366 389 366 389 0.97

6 8 1.2e-05 0.0013 20.3 4.8 1 23 411 434 411 434 0.96

7 8 0.0019 0.19 13.5 4.2 1 23 440 463 440 463 0.96

8 8 4.3e-05 0.0043 18.7 1.6 1 23 469 492 469 492 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00089	0.09	14.5	0.3	2	23	258	279	257	279	0.97
2	8	1.7e-06	0.00017	23.1	0.0	1	23	283	305	283	305	0.98
3	8	0.34	34	6.4	0.2	2	23	310	330	309	330	0.94
4	8	0.0093	0.94	11.3	1.7	1	23	337	360	337	360	0.96
5	8	1.9e-05	0.0019	19.8	0.2	1	23	366	389	366	389	0.97
6	8	1.2e-05	0.0013	20.3	4.8	1	23	411	434	411	434	0.96
7	8	0.0019	0.19	13.5	4.2	1	23	440	463	440	463	0.96
8	8	4.3e-05	0.0043	18.7	1.6	1	23	469	492	469	492	0.97

Sequence Information

Coding Sequence: ATGTGTCAATGTTGTTTATCAACAGAAAATCTTAAATCAATGACCGAACCTTTCATTGTTGGAAACAAGATTGAATTATACTATGATATGCTTAATAAATGCTTTCACAATTTACTTATAAGAAGAGTTGAGAACAATAGCAGTCTATTTATTTGTGACAACTGTATAGAGAAGCTTAGAACATGCTATGTATTTCACAATCAAGTTGAAAAAGTACAGGAATCATTATATAGGAATGACAAATTGGTGTTGTCTGATAATGAGAATGTGGAAGTAACTTACTATGATGAAAAAGATTTTACCGGATTGATCAAAGAAGAagatttgataaataatatttccacTGAAGAAACTTTTTGGAGTGGGCCTAAAAGTCCTCTAAAAGATAACAATCATGTTGAAATTATTACCAATGATGATGCAactaaaaatataccaaaaataCGGTCAGAAGAACAACTTCCATCTTTGGAACGAAGGGTTAAAATTGCCTTAAGCAAAATAAAACCTTCACAAATATTGGATGAACTGATCACAAATGATACAAATATACCTGAAAACCATTGTTTCATGAAATTACATGACAAGGTTAAAAGCCTTTTAAAAACTCCAGTGTTAGACGGTAGTGCCTCTAAAAATGAAAGTATCCAATCACAAACGGAAAGAAAACTTCAAAGGTCAACTTATGAAagtcatagaaaaaaatgtaagatcTATTTGAAAAAGAATAGAAAAGATTTGAAGCCATACCATCTTAATGAGAGTGAcaacaaatgtagtatttgtaGTGAAGAATTTTATAGTTACCAAACCCTAGTGGCGCACATGAACGAACATTATCCACAATATATTTGTGACAAATGTGGCAAAGGATTCGCAGTACGCTCCGCACTTAGGGCTCATATTCAAATACATGACGAGGGCATACCGTGTGAAATTTGCAGCAAAAAAATTATGAAgagaaatttatcaaaacaTGTTAACGCACATTTGGGGAAAAAAGATATTCATCGCTGTCCGTTATGTGATCaacgatttgaaaaatttagcAGTCGAGCTTTACACATGGAGaaggaacataatattgtaaagagATATAAATGTAAATGGTGCGGGAAAATTTTTCAGTTAGCAGCTAACTTAAATCTGCATATCAGAGATCAACACAATCCGTTTGTACGAATGCAAATTAGACCCAATACTTCCACCCAGAAACCCAGAGCGAGGTGCTTTGAATGTGATACTTGTGGTAAAACATTTAGACAAAAACTGCATTTAGAACATCATCAAATATCTAAACAcggtaatgaaaaaaattaccaGTGTCATATTTGCTTACGTTCCTACTTCCTGAAATATTCGTTAAATCAGCACATGAAGGACTATCACTTTGAAACATCCAAGTTCTCCTGCTTTATTTGCAATAAAGTTTTTAAGGTAAAGCGAATGGTAACCAGACACATCAAACGAGTTCACAATAAACAAATTCATATAAAGCAAAGAGATTGTCTCACGGGTGTCCACATCATAATAAGAGAACTCGTCCAATTTGTGTTTGTAGACAAAACTCATTCAATGTCTTTCAACTTGTCCATCGGAGACATTGTTAGATGGGGCGGGTCTAGGAGACACTTTTGCGGCAACAATGTGGCTAGGATGGATGATACCAGAATCAACAATGTGGTGGCGAACAACATTCCACTGGCGGTCGCCAACCCAGAACACCTCCAAAAACATGGAAAGATAGTTGGAGTTCAGCATCCCAGGAGACTTCTATGTTAA
Protein Sequence: MCQCCLSTENLKSMTEPFIVGNKIELYYDMLNKCFHNLLIRRVENNSSLFICDNCIEKLRTCYVFHNQVEKVQESLYRNDKLVLSDNENVEVTYYDEKDFTGLIKEEDLINNISTEETFWSGPKSPLKDNNHVEIITNDDATKNIPKIRSEEQLPSLERRVKIALSKIKPSQILDELITNDTNIPENHCFMKLHDKVKSLLKTPVLDGSASKNESIQSQTERKLQRSTYESHRKKCKIYLKKNRKDLKPYHLNESDNKCSICSEEFYSYQTLVAHMNEHYPQYICDKCGKGFAVRSALRAHIQIHDEGIPCEICSKKIMKRNLSKHVNAHLGKKDIHRCPLCDQRFEKFSSRALHMEKEHNIVKRYKCKWCGKIFQLAANLNLHIRDQHNPFVRMQIRPNTSTQKPRARCFECDTCGKTFRQKLHLEHHQISKHGNEKNYQCHICLRSYFLKYSLNQHMKDYHFETSKFSCFICNKVFKVKRMVTRHIKRVHNKQIHIKQRDCLTGVHIIIRELVQFVFVDKTHSMSFNLSIGDIVRWGGSRRHFCGNNVARMDDTRINNVVANNIPLAVANPEHLQKHGKIVGVQHPRRLLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -