Mlon036460.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mystacides longicornis
Gene Symbol
RIM101
Assembly
GCA_963576905.1
Location
OY756437.1:6611681-6619613[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.034 3.4 9.5 0.1 1 20 398 417 398 419 0.94
2 11 0.0027 0.27 13.0 2.3 2 23 440 461 439 461 0.97
3 11 0.095 9.6 8.1 0.3 2 21 567 586 566 587 0.92
4 11 9.4e-06 0.00095 20.7 3.9 1 23 594 616 594 616 0.98
5 11 0.004 0.41 12.4 0.1 1 20 646 665 646 667 0.97
6 11 0.0017 0.17 13.6 0.7 2 23 703 724 702 724 0.96
7 11 1 1e+02 4.9 2.2 5 23 733 752 731 752 0.91
8 11 0.035 3.5 9.5 0.1 3 23 760 779 758 779 0.93
9 11 8.9e-07 9e-05 23.9 4.0 1 23 785 807 785 807 0.99
10 11 0.00049 0.05 15.3 0.3 2 23 814 835 813 835 0.97
11 11 0.00056 0.057 15.1 0.6 1 23 841 863 841 863 0.97

Sequence Information

Coding Sequence
atgccTTGCTGTGCTATAAGAACATGCAGGATTCGAAGGAATTCTATGGAAGCAAAACGAGAAAACATTTCATTCCATAAGTTTCCCAAGAATCCTCAAAAGAGGTTGGAGTGGGTGAATAAAATAGATCGTCCAGGTTGGGTCCCGAACGATGCAACCGTTGTGTGCTCAAAACATTTTACGGTTTTCGATTTTCTCGGCTCGAGTAAAGGGAATAAGTTATTGAAAGGGGCCATACCAACATTACATTTACACGATCATGTGGATGAAAGAACGATGGCAACTAAGGCTAAAGAAAGAAAGCGCAGGATACCAAAAACAAAGAATCAGCTGACAAAGACGTCGACTACAGAGGCACAAGATAAAGAAGAAGAGGAGGAAATGGAAAATGGTCCAACGTCGGAATATGATGCTGCTTTTGAAGATGATAAGAGCATGGATATACCCTTGGTGGATATCAAAATCGAAACTAtTGGCGAACCGTCCAATGATCCTGAACTACTGGCCCAAGAAAGAATGGTGATTGTGGAGATTGTAAAAAGCATCATGTGTTCCCTAGATTTACTGGTTAAGTCTGATCCAGACAGCTTGAGAAGCTCAAATGTTAGGGATAAGATAATAGAAGCGTTGTTCTGTTACCACCATATAGTTGATGATAAAGATCTCAATTTGGCCTTGTGTAAGGagactgatatttttattaataatgataGCGAACCCGCGAAGGAAATCGAAACTGTGGTGTACGACGAAACAAAAGACGAAGAAATGGACGACTCTAACCTTTTTGACGATTTCAATGAGGACGACTATCCGGATGAAGATtacgaagaagaagatttctTAACTGACGAAGAAGACGACGAATGGAAGTCCTTAAAATGTTTACGGGACaaaatcaaaagtaaaaaaaacctCGCAGACAAACCTCCtaagaaaagtaaaaatatagaATCTCTGAGAACCATTAAGAAATTAGTACAATTATTCCAAAATAAAGACACGGGCAAAATTgataaagcaaaaaaaaagaacaaaagtGTGGACGGGGTGAAGAGGAAATACAAGAAGAGAGGGAGGAAACGGAATGAATTGAACACCTCAGAGGAAACCACCGACAGTGTCGTTGACTCCAAAGTTAAGGACGAAATCAAAATGGATGGAGTTCCCTTCGAATCAGCCATTCCGAGATTCGTTTGTGAGATATGCGATGTTACATTGGTAAGTGAGCACCATTTAGCCGTACACAAACTTCTGTGCAGAAGAAGACATTTTTACTATGGCAACCCTAAGTTAGAAGATTTTTGGAACGATGTCAAATGTCCATTGTGTGATGTCAAATGTAATCACAGAGGGAATTTAGGAAGACATTATATTACTCACAGAGtcaAAGATATAGAATCGGCGTTTGCACCGCTCAAAGAGAAACATTTGAATCCAAACgactcagaaaaaaatatgagattATTGAACGATTTCATTGTGGAGTTTGAGAGATTGGACGCAGAAAATGAACAACAATTCAATAATTCCTTGCCATCGAATCAGCAAAATGCCGACGATGGTACAAAAGACAAGATGGACAGCGAAAAGTCTGAAAATACCGTGGAACATAAGAAACAGACAAAGAAGATATCCCATTATTTAAAGTTCAATTTGAAAAAGATTGTGTACGATATTGATTTTGACAAAGACCTTTACTGCTACTCGTGCGACCTGTTGTTCAACACCAAGGACGAGCTGGAAGTTCATAAGAAGAAGGTGAACGACACGGACGCCTTTGTATgtaaccattgcgataaaaccTTTGATACTCCCACCAAGTTGATACACCACGCTAAAACACACACagGTTTGTATAATCCCAAAAGTTTATATCTGAATTTCAAGATGGAGGACGCTGAAGGTTGCCCAACGCAATTGGATTACAAAATTTACGTTTGTAAATATTGTCTGGTGATGTTTGTTCAAGAAGCCTCTCTGCAATCCCACATgggatattacaaaaaaaatacggaatgctacaaaaaaatatacaagtcGCCGAGGGGTACTGTTTCAAAAAGGACCCCGCCTGGCATCCAGAGGACAGAAGATGATAAATTACAATGCAATAAATGCGAAAAAGCCTACAAAAATTACTATATGTTTTTGGAGCATTTGGCTTCGCACGCCGATCAAACCAAGTATCACTGCGAGTGTGGAAAAGGTTTTAAATCTAAGCAGCGGTTAAAGTTCCATATAAATCTAGTACACAGTAGAAAGTTCCAAGTGATCTGTGAAGTGTGCGGTATAaacgttttatattttaatttacgtCGTCATATGAGGGTGCATTCTAGTCTAAAACCGTACAAATGTAATTATTGCAATAAGACTTTTAAATATAAAGAATCGGTCACGACCCACATCAGAACTCACACGCACGAAAAACCGTGGCAGTGTCAATATTGTGGAATGGCGTTTTCCGAGAAACGAAGATATAACATACATATTAACATACACGAAGGGAAAACTCCCTATAAATGCAACCAATGTCCCAACGCGTTTGTGTCGAAATTAAAACTCAATAAACATCTGTTGGAACATCAagattgtagaatttga
Protein Sequence
MPCCAIRTCRIRRNSMEAKRENISFHKFPKNPQKRLEWVNKIDRPGWVPNDATVVCSKHFTVFDFLGSSKGNKLLKGAIPTLHLHDHVDERTMATKAKERKRRIPKTKNQLTKTSTTEAQDKEEEEEMENGPTSEYDAAFEDDKSMDIPLVDIKIETIGEPSNDPELLAQERMVIVEIVKSIMCSLDLLVKSDPDSLRSSNVRDKIIEALFCYHHIVDDKDLNLALCKETDIFINNDSEPAKEIETVVYDETKDEEMDDSNLFDDFNEDDYPDEDYEEEDFLTDEEDDEWKSLKCLRDKIKSKKNLADKPPKKSKNIESLRTIKKLVQLFQNKDTGKIDKAKKKNKSVDGVKRKYKKRGRKRNELNTSEETTDSVVDSKVKDEIKMDGVPFESAIPRFVCEICDVTLVSEHHLAVHKLLCRRRHFYYGNPKLEDFWNDVKCPLCDVKCNHRGNLGRHYITHRVKDIESAFAPLKEKHLNPNDSEKNMRLLNDFIVEFERLDAENEQQFNNSLPSNQQNADDGTKDKMDSEKSENTVEHKKQTKKISHYLKFNLKKIVYDIDFDKDLYCYSCDLLFNTKDELEVHKKKVNDTDAFVCNHCDKTFDTPTKLIHHAKTHTGLYNPKSLYLNFKMEDAEGCPTQLDYKIYVCKYCLVMFVQEASLQSHMGYYKKNTECYKKIYKSPRGTVSKRTPPGIQRTEDDKLQCNKCEKAYKNYYMFLEHLASHADQTKYHCECGKGFKSKQRLKFHINLVHSRKFQVICEVCGINVLYFNLRRHMRVHSSLKPYKCNYCNKTFKYKESVTTHIRTHTHEKPWQCQYCGMAFSEKRRYNIHINIHEGKTPYKCNQCPNAFVSKLKLNKHLLEHQDCRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01025035;
90% Identity
iTF_01025035;
80% Identity
iTF_01025035;